Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26060 107 / 4e-31 Ribosomal protein L18ae family (.1) AT5G57060 105 / 8e-31 unknown protein AT1G54217 96 / 4e-27 Ribosomal protein L18ae family (.1.2.3) AT3G14595 40 / 4e-05 Ribosomal protein L18ae family (.1) AT1G29970 40 / 6e-05 RPL18AA 60S ribosomal protein L18A-1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G044400 [exp] 134 / 1e-42 AT5G57060 103 / 3e-30 unknown protein Potri.006G146300 [exp] 106 / 7e-31 AT4G26060 152 / 2e-48 Ribosomal protein L18ae family (.1) Potri.018G050900 [exp] 103 / 1e-29 AT4G26060 151 / 4e-48 Ribosomal protein L18ae family (.1) Potri.001G380200 [exp] 39 / 0.0001 AT1G17080 127 / 3e-38 Ribosomal protein L18ae family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011943 [exp] 102 / 1e-28 AT4G26060 150 / 4e-47 Ribosomal protein L18ae family (.1) Lus10027625 [exp] 96 / 1e-26 AT4G26060 147 / 2e-46 Ribosomal protein L18ae family (.1) Lus10042485 [exp] 45 / 5e-07 AT3G17940 113 / 2e-31 Galactose mutarotase-like superfamily protein (.1) Lus10026180 [exp] 44 / 3e-06 AT1G29970 63 / 7e-12 60S ribosomal protein L18A-1 (.1.2.3) Lus10026193 [exp] 41 / 2e-05 AT1G17080 87 / 3e-22 Ribosomal protein L18ae family (.1) Lus10042474 [exp] 40 / 7e-05 AT1G53560 85 / 1e-20 Ribosomal protein L18ae family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G198700.1 pacid=42792101 polypeptide=Potri.001G198700.1.p locus=Potri.001G198700 ID=Potri.001G198700.1.v4.1 annot-version=v4.1 ATGAATGAGGGGTATTCAACTGATGCCATGAACCAGAGAGAAGGTGATTATGTTCCAATTAGAGATGCAGAGAACGTCCAACTGGGAATGTTTGACAAAC CCCTTCCTTGCTTTGGTTGTGGAATTGGATGGTTTTCCCTTTTGCTTGGATTTGTGTTCCCACTGATGTGGTACTTCTCAGCAATTCTCTACTTTGGGAA GTACTATAACAAGGATCCAAGGGAGCGATCTGGCCTTGCTGCCTGTGCAATTGCTGCTGTAGTGTTCACAATAGCTGCGGTGATCGCTTTACTTGTTTAT TTGTTGTGA
AA sequence Show only first row Show all	>Potri.001G198700.1 pacid=42792101 polypeptide=Potri.001G198700.1.p locus=Potri.001G198700 ID=Potri.001G198700.1.v4.1 annot-version=v4.1 MNEGYSTDAMNQREGDYVPIRDAENVQLGMFDKPLPCFGCGIGWFSLLLGFVFPLMWYFSAILYFGKYYNKDPRERSGLAACAIAAVVFTIAAVIALLVY LL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G26060			Ribosomal protein L18ae family...		Potri.001G198700 [exp]	0	1
AT5G41340		ATUBC4, UBC4	ubiquitin conjugating enzyme 4...		Potri.001G101900 [exp]	8.66	0.7219	UBC4.4
AT1G79390			unknown protein		Potri.010G174700 [exp]	16.30	0.7221
					Potri.001G123250 [exp]	17.66	0.7665
					Potri.005G214850 [exp]	17.66	0.7252
AT5G05800			unknown protein		Potri.004G135901 [exp]	21.63	0.6924
AT4G21192			Cytochrome c oxidase biogenesi...		Potri.004G227500 [exp]	24.37	0.7294
AT1G26550			FKBP-like peptidyl-prolyl cis-...		Potri.008G089900 [exp]	25.27	0.7405
AT2G04520			Nucleic acid-binding, OB-fold-...		Potri.014G160900 [exp]	26.00	0.7228
AT1G61780			postsynaptic protein-related (...		Potri.004G021200 [exp]	29.24	0.7182
AT3G48030			hypoxia-responsive family prot...		Potri.015G073300 [exp]	30.85	0.7197

Compare expression of checked genes

Potri.001G198700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.