Plant FIBer expression Database

Potri.001G198900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G72790 182 / 2e-50 hydroxyproline-rich glycoprotein family protein (.1)
AT5G57070 71 / 1e-12 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G145900
[exp]
75 / 5e-14 AT5G57070 100 / 3e-22 hydroxyproline-rich glycoprotein family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008464
[exp]
163 / 3e-43 AT1G72790 110 / 2e-25 hydroxyproline-rich glycoprotein family protein (.1)
Lus10006024
[exp]
159 / 1e-41 AT1G72790 122 / 3e-29 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05553 DUF761 Cotton fibre expressed protein
Representative CDS sequence
>Potri.001G198900.1 pacid=42793729 polypeptide=Potri.001G198900.1.p locus=Potri.001G198900 ID=Potri.001G198900.1.v4.1 annot-version=v4.1
ATGGACGAAGAGGAAGACATGCCGCTATTCTGGCTTCAAGCCACCAACACTCGCCACCGTTCCCGCGGCCTCCGCCGTCAAACCTCCTCTATCTTCCTAA
ATTCTGGTGTATTTCTCGTAATATTACTAGTTGTAGCTCTCGCTTTTGTCCTTGTTGTTGTTTCTTCAATTGGCTCTTTGACATCTCAAATTTTGAGACC
ACAGTCGATCAAGAAAAGTTGGGACTCACTCAACTTGGTTCTGGTCCTCTTTGCTATTGTCTGTGGATTTCTTAGCAGCAACAACAGCAGCGGCAGCAGC
GGCAGCAGCGGCAGCGGCAGCGGCAGCGGCGGCGATAATGAAAACACGAGTTATTACGAAGATCAAAGCCTATCAAATGTACAAAAACCATCACATCCGT
CAAGTACTCCTTCACATAGATGGTTTGAGCATCAGGATCGAACTGTGAGCTATAACACATTGAACAGACTGAGGAGTTTCAGTTCGTATCCAGATCTTCG
TCAAGAATCTTTGGAACGGTGGAGATTTTATGATGATACCCACCTGAATAACTACAGGTTTTCAACCTCAAGTGATCAGATTCATCATCATTATCCGCAG
CAAGTCGAGGAAACTAAAAAACAAGAAGAGGGTGTTGGTGTTAAAGATATAGACGTTGATACCTTTGTGATAAATCAAAAGGAAGTTTCATATCCATCAT
CGCCACCTCCATTTCCTCCACCACATCCATCATCATCACCTCCATTGCCACCATCTCCGCCTCCTAAGCTTGTGAGGAGAAAGGTGAAGAGAACATATCA
AGATCTTGGATATGAAAAAAGAACCGATCATGAGGAGAAAGTCCTTGAAAACTTCTACAATATCCCGCCACCATCTCCGCCGCCTCCTCCTCCTCCACCA
CCACCACCACCACCACCTATATTCAGCAAGAACGAGAAAAGGAGAGGCAAAGATTTCTTGATTTCACTAAGAAGAAAGAAAAAGAAGCAGAGACAAAAGA
GCGTTGAAAATCTTGATAGCTTCTTCAATCCTCAACCTACCCCAACTAGTACTCTACCTTTGATACCGCCACCCCCGCCTCCACCCCCACCACCTCATTT
TCTTCAAAATTTGTTCTCAAAGAAAGGCAAAACCAAAAAACTCCATCCAGTTCCCCCGCCGCCACCTCCACCACCAGTCACACGTGTATCAAAGGTGGTC
TCCCAAAAGGTTACGTCAAGAACCAAGGTCCAAGTAGCACCATTGACATCTGATAAACCTCCAGAACCAGCCAAGACACGTCGTTTCCATAGCGTGGAAG
AGAATGTGGAGAGAGGGAATGCTTCACGTTTGATTCCACTACCGCCGCCGCCTCCGCCGCCGCCATTCAAAATGCCAGCATGGAAATTTGTTCATGATGG
TGACTATGTTAGAGTAGGGAGTTTCAACAGTTCGAGGAGTGGATCACCGGATTTGGATAGCATTGAGGATGCATCATCAGAGAAGGATCAGTCAAGTCCA
GTGGCAGCAGCAAGTGGATCAGATTCAGCAGCAACGGCATTGTTTTGTCCAAGTCCTGACGTGAACACCAAGGCTGATAATTTCATAGCGAGGTTTAGAG
CTGGTTTGACGTTAGAGAAGGTGAATTCTGCCAACAGAAGGTCAAATCTTGGTCCGGAAGCCAGCACAAGCACAGGCACAAGCACAAGCTAG
AA sequence
>Potri.001G198900.1 pacid=42793729 polypeptide=Potri.001G198900.1.p locus=Potri.001G198900 ID=Potri.001G198900.1.v4.1 annot-version=v4.1
MDEEEDMPLFWLQATNTRHRSRGLRRQTSSIFLNSGVFLVILLVVALAFVLVVVSSIGSLTSQILRPQSIKKSWDSLNLVLVLFAIVCGFLSSNNSSGSS
GSSGSGSGSGGDNENTSYYEDQSLSNVQKPSHPSSTPSHRWFEHQDRTVSYNTLNRLRSFSSYPDLRQESLERWRFYDDTHLNNYRFSTSSDQIHHHYPQ
QVEETKKQEEGVGVKDIDVDTFVINQKEVSYPSSPPPFPPPHPSSSPPLPPSPPPKLVRRKVKRTYQDLGYEKRTDHEEKVLENFYNIPPPSPPPPPPPP
PPPPPPIFSKNEKRRGKDFLISLRRKKKKQRQKSVENLDSFFNPQPTPTSTLPLIPPPPPPPPPPHFLQNLFSKKGKTKKLHPVPPPPPPPPVTRVSKVV
SQKVTSRTKVQVAPLTSDKPPEPAKTRRFHSVEENVERGNASRLIPLPPPPPPPPFKMPAWKFVHDGDYVRVGSFNSSRSGSPDLDSIEDASSEKDQSSP
VAAASGSDSAATALFCPSPDVNTKADNFIARFRAGLTLEKVNSANRRSNLGPEASTSTGTSTS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G72790 hydroxyproline-rich glycoprote... Potri.001G198900
[exp]
0 1
AT2G38360 PRA1.B4 prenylated RAB acceptor 1.B4 (... Potri.016G126400
[exp]
3.46 0.7489
AT3G54810 GATA GATA8, BME3, BM... GATA TRANSCRIPTION FACTOR 8, B... Potri.010G223300
[exp]
3.87 0.7797
AT5G38700 unknown protein Potri.014G123400
[exp]
4.24 0.8008
AT5G46910 Transcription factor jumonji (... Potri.003G096100
[exp]
4.58 0.7646
AT4G07960 ATCSLC12 CELLULOSE-SYNTHASE LIKE C12, C... Potri.005G146900
[exp]
4.69 0.8265
AT5G58430 ATEXO70B1 exocyst subunit exo70 family p... Potri.013G152900
[exp]
5.47 0.6948
AT5G57510 unknown protein Potri.006G273566
[exp]
7.07 0.7497
AT5G38700 unknown protein Potri.002G198800
[exp]
7.07 0.7692
AT5G52020 AP2_ERF Integrase-type DNA-binding sup... Potri.001G110500
[exp]
9.89 0.7433 DREB65
AT2G01050 zinc ion binding;nucleic acid ... Potri.017G002400
[exp]
10.81 0.7482

Potri.001G198900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.