Plant FIBer expression Database

Potri.001G199100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G72810 836 / 0 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1)
AT4G29840 833 / 0 TS, MTO2 THREONINE SYNTHASE, METHIONINE OVER-ACCUMULATOR 2, Pyridoxal-5'-phosphate-dependent enzyme family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G033200
[exp]
945 / 0 AT1G72810 833 / 0.0 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003317
[exp]
872 / 0 AT4G29840 858 / 0.0 THREONINE SYNTHASE, METHIONINE OVER-ACCUMULATOR 2, Pyridoxal-5'-phosphate-dependent enzyme family protein (.1)
Lus10008462
[exp]
780 / 0 AT4G29840 777 / 0.0 THREONINE SYNTHASE, METHIONINE OVER-ACCUMULATOR 2, Pyridoxal-5'-phosphate-dependent enzyme family protein (.1)
Lus10003316
[exp]
65 / 3e-13 AT1G72810 61 / 6e-13 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF00291 PALP Pyridoxal-phosphate dependent enzyme
Representative CDS sequence
>Potri.001G199100.1 pacid=42792436 polypeptide=Potri.001G199100.1.p locus=Potri.001G199100 ID=Potri.001G199100.1.v4.1 annot-version=v4.1
ATGCCTTCTTCATATCTTCTCCAATCTCCCAGCTTCTCCACCAATCTCAAGCTTCCCTCAAAACCCAGAACTCCCACACCAACCCCTTGTTCTCTCTCCG
TCAAAGCCTCCTCCTCCTCCTCCTCCTCGAACAATACCCCCGCCAGCACCTCAAGCAAAGGGAACAACATTCGCGACGAAGCCCGCCGCCAATACCTCAC
AAACCCACCACAAAACCAGAACTTCTCCGCCAAATACGTCCCTTTCAACGCTGACCCTGCCACCAACACAGAGTCCTACTCCCTCGACGAGATCGTCTAC
CGATCCCAGTCTGGCGGCCTCCTCGATGTCCAACACGACATCTCCGCCCTCAAAGCCTTTCCTGGCTCCTACTGGCGTGCCCTCTTCGACTCTCGCGTTG
GCAAGACCACTTGGCCTTATGGTTCCGGTGTGTGGTCCAAGAAAGAATGGGTCTTGCCTGAGATTTCTAGTGATGATATTGTCAGTGCCTTTGAGGGCAA
CTCTAATCTCTTCTGGGCTGAAAGGCTTGGTAAACACTTCCTTGAGATGAATGAGTTGTGGGTTAAACATTGTGGGATTAGCCATACAGGGAGTTTTAAA
GATCTGGGCATGACTGTTCTTGTTAGTCAGGTTAATAGATTGAGAAAAATGAACAAACCTGTTTTTGGTGTTGGCTGTGCTTCAACAGGCGACACCTCTG
CTGCTTTGTCTGCTTATTGTGCTTCTGCTGGTATTCCTTCTATTGTATTTTTGCCTGCTAATAAGATCTCTATTGCCCAGCTCGTGCAGCCCATTGCCAA
TGGCGCTTTTGTTCTGAGTGTTGATACTGATTTTGATGGCTGTATGCAGTTGATAAGAGAGGTTACGTCTGAGTTGCCTATTTATTTAGCCAATTCGCTA
AATAGTCTGAGGATAGAAGGGCAGAAAACTGCTGCCATAGAGATTTTGCAGCAGTTTGATTGGGAAGTGCCCGACTGGGTTATTATTCCTGGTGGGAATT
TGGGGAATATCTATGCTTTTTATAAAGGGTTTCATATGTGCAAAGAGTTGGGGCTTGTGGATAAGATTCCAAGGCTTGTTTGTGCACAGGCCGCGAATGC
CAATCCTCTCTACTTGTATTATAAGTCAGGGTGGAAGGAATTTAAAGCTGTGAAAGCCAGTGGTACATTTGCATCTGCTATTCAGATTGGCGATCCTGTT
TCAATTGATAGAGCTGTTTATGCGCTGAAACAATCGAATGGGATTGTCGAGGAGGCTACCGAGGAGGAGTTAATGGATGCAATGGCGCAAGCGGATTCGA
CGGGGATGTTTATATGCCCGCATACAGGAGTGGCATTGACGGCTTTGATGAAGCTTAGGAAGAGTGGGGTTATAGGTCCAACTGATCGGACAGTGGTGGT
TAGTACTGCCCATGGGCTTAAGTTCACTCAAAGTAAGATTGATTATCACTCGAATAATATTAAGGAAATGGCTTGTAGGTTTGCTAACCCGCCTGTGAGT
GTTAAGGCTGATTTTGGTTCTGTTATGGATGTTTTGAAGAAGTATTTGAGTAAAACACCAAAGTAG
AA sequence
>Potri.001G199100.1 pacid=42792436 polypeptide=Potri.001G199100.1.p locus=Potri.001G199100 ID=Potri.001G199100.1.v4.1 annot-version=v4.1
MPSSYLLQSPSFSTNLKLPSKPRTPTPTPCSLSVKASSSSSSSNNTPASTSSKGNNIRDEARRQYLTNPPQNQNFSAKYVPFNADPATNTESYSLDEIVY
RSQSGGLLDVQHDISALKAFPGSYWRALFDSRVGKTTWPYGSGVWSKKEWVLPEISSDDIVSAFEGNSNLFWAERLGKHFLEMNELWVKHCGISHTGSFK
DLGMTVLVSQVNRLRKMNKPVFGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSVDTDFDGCMQLIREVTSELPIYLANSL
NSLRIEGQKTAAIEILQQFDWEVPDWVIIPGGNLGNIYAFYKGFHMCKELGLVDKIPRLVCAQAANANPLYLYYKSGWKEFKAVKASGTFASAIQIGDPV
SIDRAVYALKQSNGIVEEATEEELMDAMAQADSTGMFICPHTGVALTALMKLRKSGVIGPTDRTVVVSTAHGLKFTQSKIDYHSNNIKEMACRFANPPVS
VKADFGSVMDVLKKYLSKTPK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G72810 Pyridoxal-5'-phosphate-depende... Potri.001G199100
[exp]
0 1
AT3G60450 Phosphoglycerate mutase family... Potri.002G141000
[exp]
1.41 0.7377
AT5G57020 ATNMT1, NMT1 ARABIDOPSIS THALIANA MYRISTOYL... Potri.006G147500
[exp]
6.00 0.6774 Pt-NMT1.6
AT4G09580 SNARE associated Golgi protein... Potri.013G113000
[exp]
9.16 0.6142
AT5G59440 ATTMPK.2, ATTMP... ZEUS1, ARABIDOPSIS THALIANA TH... Potri.001G334900
[exp]
15.16 0.6182
AT5G07610 F-box family protein (.1) Potri.013G110300
[exp]
15.58 0.6626
AT1G27600 IRX9-L, I9H IRREGULAR XYLEM 9-LIKE, IRREGU... Potri.002G107300
[exp]
17.32 0.6307
AT3G19360 C3HZnF Zinc finger (CCCH-type) family... Potri.009G130600
[exp]
20.66 0.6732
AT5G14600 S-adenosyl-L-methionine-depend... Potri.018G120500
[exp]
22.49 0.6507
AT4G20980 Eukaryotic translation initiat... Potri.004G044500
[exp]
29.52 0.6633
AT1G23170 Protein of unknown function DU... Potri.010G110500
[exp]
29.59 0.6889

Potri.001G199100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.