Plant FIBer expression Database

Potri.001G199300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G80140 189 / 3e-58 Pectin lyase-like superfamily protein (.1)
AT4G32380 161 / 4e-47 Pectin lyase-like superfamily protein (.1)
AT1G80170 162 / 1e-46 Pectin lyase-like superfamily protein (.1)
AT1G05660 155 / 9e-45 Pectin lyase-like superfamily protein (.1)
AT2G43880 154 / 3e-44 Pectin lyase-like superfamily protein (.1)
AT1G70500 153 / 3e-43 Pectin lyase-like superfamily protein (.1)
AT3G07970 150 / 3e-42 QRT2 QUARTET 2, Pectin lyase-like superfamily protein (.1)
AT1G05650 147 / 3e-41 Pectin lyase-like superfamily protein (.1)
AT4G01890 147 / 8e-41 Pectin lyase-like superfamily protein (.1)
AT3G57510 145 / 1e-40 ADPG1 Pectin lyase-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G119700
[exp]
163 / 2e-47 AT5G17200 356 / 1e-120 Pectin lyase-like superfamily protein (.1)
Potri.006G052700
[exp]
163 / 7e-47 AT3G07970 449 / 7e-156 QUARTET 2, Pectin lyase-like superfamily protein (.1)
Potri.016G054800
[exp]
159 / 2e-45 AT2G41850 421 / 7e-145 ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 2, polygalacturonase abscission zone A. thaliana (.1)
Potri.001G171900
[exp]
156 / 1e-44 AT1G80170 506 / 1e-178 Pectin lyase-like superfamily protein (.1)
Potri.009G060400
[exp]
154 / 1e-43 AT3G07970 514 / 0.0 QUARTET 2, Pectin lyase-like superfamily protein (.1)
Potri.017G004500
[exp]
149 / 5e-42 AT3G59850 520 / 0.0 Pectin lyase-like superfamily protein (.1)
Potri.017G003500
[exp]
148 / 7e-42 AT3G59850 498 / 4e-177 Pectin lyase-like superfamily protein (.1)
Potri.001G463000
[exp]
147 / 1e-40 AT1G23460 634 / 0.0 Pectin lyase-like superfamily protein (.1)
Potri.013G005000
[exp]
147 / 1e-40 AT1G02460 561 / 0.0 Pectin lyase-like superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040604
[exp]
169 / 4e-50 AT3G15720 249 / 1e-79 Pectin lyase-like superfamily protein (.1.2)
Lus10018302
[exp]
165 / 8e-50 AT5G17200 242 / 3e-78 Pectin lyase-like superfamily protein (.1)
Lus10032875
[exp]
159 / 6e-46 AT3G15720 342 / 3e-114 Pectin lyase-like superfamily protein (.1.2)
Lus10026299
[exp]
157 / 1e-45 AT3G07970 418 / 3e-145 QUARTET 2, Pectin lyase-like superfamily protein (.1)
Lus10040610
[exp]
157 / 9e-45 AT5G17200 346 / 7e-116 Pectin lyase-like superfamily protein (.1)
Lus10036084
[exp]
157 / 1e-44 AT1G80170 491 / 2e-172 Pectin lyase-like superfamily protein (.1)
Lus10042371
[exp]
155 / 1e-43 AT3G07970 432 / 5e-149 QUARTET 2, Pectin lyase-like superfamily protein (.1)
Lus10019711
[exp]
151 / 2e-42 AT3G07970 461 / 1e-160 QUARTET 2, Pectin lyase-like superfamily protein (.1)
Lus10029511
[exp]
150 / 9e-42 AT3G07970 480 / 1e-167 QUARTET 2, Pectin lyase-like superfamily protein (.1)
Lus10011419
[exp]
143 / 7e-40 AT2G43870 507 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0268 Pec_lyase-like PF00295 Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence
>Potri.001G199300.1 pacid=42787902 polypeptide=Potri.001G199300.1.p locus=Potri.001G199300 ID=Potri.001G199300.1.v4.1 annot-version=v4.1
ATGGATGGACGTGGTAAAGGCTGGTGGGATGCCTCCTGCCGATACCGCCATGGAAAGGCTGTAAGATTCGAAGGATGTGAACATTTGCTTGTGGACCACA
TCAACATTGTAAACAGTCCACAAATTCATATCACTCTCCTGGGAAGCCGAAATGCAGAGTTGAGATTCTTAGACATACAGTCTCCTGAAAGCAGCCCTAA
CACCGACGGAATTCACATTTCATCCTCTAACGATGTTACGATCCACGACTCAATTATTGGTTCTGGTGATGATTGCATCTCCATTGGAGATTACACTTCC
AACATTACTATTCTTGATGTTTCTTGTGGCCCTGGTCATGGTATTAGCAGTAACCTCAGTATTTTTGTTGCTCAACTTCGAAACAGCATTGGGAGTTTTG
GTGGGGGTGGAAATGAGGTGGAGGTGGAGGGCATATTTGTAAGTCGCGCTAACTTCAGTGGTACAACCAATGGAGCTCGGATCAAAACATGGCAGGGGGC
TAGAGGTAATGTCAGAGACGTCCATTTCTCTGATTTAATCTTCACAGCAGTGGAAAATCCAATTATCATCGATGAGCACTATGGTGATCCGCAAGAAAAA
AATCAAACCGGGGTGCACATAAGCGATGTGAGCTATTCTAGGGCACAAGGCACGGCGAAGACAGCAGTGGCTATCAACTTCAATTGTAGCAGTAGCGTTG
CTTGCACCAACATCACGTTAGACAATATTCAGTTGAAATCATCTATTCGAGGACAACAACTCTCTTCTTTCTGTATCAATGCTCATGGTATCACTAAAGG
GATTGTGTACCCTAAGTCCTGTCTTAATTCCATGAAATATCAACGTGCATGA
AA sequence
>Potri.001G199300.1 pacid=42787902 polypeptide=Potri.001G199300.1.p locus=Potri.001G199300 ID=Potri.001G199300.1.v4.1 annot-version=v4.1
MDGRGKGWWDASCRYRHGKAVRFEGCEHLLVDHINIVNSPQIHITLLGSRNAELRFLDIQSPESSPNTDGIHISSSNDVTIHDSIIGSGDDCISIGDYTS
NITILDVSCGPGHGISSNLSIFVAQLRNSIGSFGGGGNEVEVEGIFVSRANFSGTTNGARIKTWQGARGNVRDVHFSDLIFTAVENPIIIDEHYGDPQEK
NQTGVHISDVSYSRAQGTAKTAVAINFNCSSSVACTNITLDNIQLKSSIRGQQLSSFCINAHGITKGIVYPKSCLNSMKYQRA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G80140 Pectin lyase-like superfamily ... Potri.001G199300
[exp]
0 1

Potri.001G199300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.