Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51730 295 / 3e-101 Ubiquitin-conjugating enzyme family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G193700 [exp] 394 / 3e-140 AT1G51730 303 / 1e-104 Ubiquitin-conjugating enzyme family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006873 [exp] 286 / 7e-98 AT1G51730 328 / 3e-114 Ubiquitin-conjugating enzyme family protein (.1) Lus10037613 [exp] 271 / 9e-92 AT1G51730 313 / 1e-108 Ubiquitin-conjugating enzyme family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [poplar] [flax] UBC PF05773 [poplar] [flax] RWD RWD domain
Representative CDS sequence Show only first row Show all	>Potri.001G199500.1 pacid=42791405 polypeptide=Potri.001G199500.1.p locus=Potri.001G199500 ID=Potri.001G199500.1.v4.1 annot-version=v4.1 ATGACTGACTATGGACAGGAGCAGGAGATGGAAATCGAAGCATTGGAAGCCATACTTATGGATGAGTTCAAAGAAGTTCATTCTAGCGAGAGTGGCTTAA ACACTTCTAATCGTTGCTTCCTAATAACAATATCTCCACAGGATGATGACACGGATGAGTCTACTGACATTCCAGTTCAGCTAGGTCTAGTTTTCTCCCA CACTGAAAAGTATCCGGATGAACCTCCACTTTTGAACGTGAAGAGCATACGAGGTATCCAAGCAGATGATCTTAAAACTTTGAAGGAAAAGCTTGAGCAA GAGGCATCTGAAAATCTTGGTATGGCGATGGTCTACACACTAGTTACGTCTGCTAAAGAGTGGCTGTCTGAAAGATACAGTCAAGATGCCAGCAATGAGG ACATTGAAAATGAAGAGGCAGCAAAAGATGATGTAATTGTACCACATGGAGAACCTGTTACTGTCGAGACATTTCTGGCTTGGAGAGAGAGATTTGAAGC AGAGTTGGCCCTTGAGCGAGCCAAGTTGATGCCTGAGTCTGCTCTCACAGCTCCGAAGGAGAAGAAGCTTACAGGCAGACTGTGGTATGAAAGTGGAAAA GCGAAAGGTGCTATAGCAGTCAATGAAGGATCTGACGTGGAAGACGAGGAAGAAATTGATTTTGATGACGATGATTTTGAAGATGATGAAGAAGATATGC TCGAGCACTATCTGGCGGAGAAATCTGACTCTTCTCACTCTTCAAGGAAAGCTGCTTAA
AA sequence Show only first row Show all	>Potri.001G199500.1 pacid=42791405 polypeptide=Potri.001G199500.1.p locus=Potri.001G199500 ID=Potri.001G199500.1.v4.1 annot-version=v4.1 MTDYGQEQEMEIEALEAILMDEFKEVHSSESGLNTSNRCFLITISPQDDDTDESTDIPVQLGLVFSHTEKYPDEPPLLNVKSIRGIQADDLKTLKEKLEQ EASENLGMAMVYTLVTSAKEWLSERYSQDASNEDIENEEAAKDDVIVPHGEPVTVETFLAWRERFEAELALERAKLMPESALTAPKEKKLTGRLWYESGK AKGAIAVNEGSDVEDEEEIDFDDDDFEDDEEDMLEHYLAEKSDSSHSSRKAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G51730			Ubiquitin-conjugating enzyme f...		Potri.001G199500 [exp]	0	1
AT1G68220			Protein of unknown function (D...		Potri.008G124100 [exp]	8.60	0.7475
					Potri.006G059400 [exp]	11.57	0.7430
AT3G61113			Ubiquitin related modifier 1 (...		Potri.014G078200 [exp]	13.78	0.7182
AT4G34770			SAUR-like auxin-responsive pro...		Potri.004G165900 [exp]	18.13	0.7147
AT2G38550			Transmembrane proteins 14C (.1...		Potri.016G137200 [exp]	24.55	0.7100
AT5G41685			Mitochondrial outer membrane t...		Potri.006G077500 [exp]	27.12	0.6936	Pt-TOM7.2
AT1G22140			unknown protein		Potri.005G167200 [exp]	28.56	0.6933
AT1G08580			unknown protein		Potri.019G049300 [exp]	35.87	0.7000
AT5G03455		ACR2, ARATH;CDC...	ARSENATE REDUCTASE 2, Rhodanes...		Potri.006G122700 [exp]	53.35	0.6764
AT1G02780		EMB2386	embryo defective 2386, Ribosom...		Potri.004G078000 [exp]	61.70	0.6810	Pt-RPL19.3

Compare expression of checked genes

Potri.001G199500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.