Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51720 1033 / 0 Amino acid dehydrogenase family protein (.1) AT3G03910 139 / 2e-35 GDH3 glutamate dehydrogenase 3 (.1) AT5G07440 136 / 9e-35 GDH2 glutamate dehydrogenase 2 (.1.2.3) AT5G18170 133 / 1e-33 GDH1 glutamate dehydrogenase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G193600 [exp] 363 / 5e-123 AT1G51720 303 / 7e-100 Amino acid dehydrogenase family protein (.1) Potri.015G111000 [exp] 141 / 2e-36 AT5G07440 773 / 0.0 glutamate dehydrogenase 2 (.1.2.3) Potri.012G113500 [exp] 141 / 2e-36 AT5G07440 766 / 0.0 glutamate dehydrogenase 2 (.1.2.3) Potri.013G058300 [exp] 127 / 1e-31 AT5G18170 787 / 0.0 glutamate dehydrogenase 1 (.1) Potri.019G034800 [exp] 127 / 2e-31 AT5G18170 783 / 0.0 glutamate dehydrogenase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006872 [exp] 1047 / 0 AT1G51720 1019 / 0.0 Amino acid dehydrogenase family protein (.1) Lus10037612 [exp] 978 / 0 AT1G51720 947 / 0.0 Amino acid dehydrogenase family protein (.1) Lus10032509 [exp] 136 / 2e-33 AT5G07440 771 / 0.0 glutamate dehydrogenase 2 (.1.2.3) Lus10003858 [exp] 130 / 2e-32 AT5G18170 782 / 0.0 glutamate dehydrogenase 1 (.1) Lus10005697 [exp] 129 / 5e-32 AT5G18170 780 / 0.0 glutamate dehydrogenase 1 (.1) Lus10020288 [exp] 127 / 2e-31 AT5G18170 780 / 0.0 glutamate dehydrogenase 1 (.1) Lus10043007 [exp] 123 / 1e-30 AT5G07440 649 / 0.0 glutamate dehydrogenase 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00208 [poplar] [flax] ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CL0603 [poplar] [flax] AA_dh_N PF02812 [poplar] [flax] ELFV_dehydrog_N Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
Representative CDS sequence Show only first row Show all	>Potri.001G199600.6 pacid=42792021 polypeptide=Potri.001G199600.6.p locus=Potri.001G199600 ID=Potri.001G199600.6.v4.1 annot-version=v4.1 ATGTTGCTACCAGCTGAGGGGATAAGGATGAATTCCACGATGGATGATATTAACTTGATTCAGCAAGCACAGAGGCATCATTTGGTGGTCAGAGAGCTTG GAGAGGAGATCGATTTGGAAATTGGTCATGGAGATGATGACCATTCATTTGCTAACACTCCTATTATGGGTGGTCGGCCACGAGAACATTCTGCTGAGGA CAATGATGAAGTCAAGAATATGATGGCTTCTTCTCAATTTTCAAACGAAGAACAAGATGTGCCAAAGACACAACCAGTAAAGAGGAAGAAAAAGGTGGTC AAAAGATGGAGAGAGGAATGGGCAGATACCTACAAGTGGGCATACGTGGATGTGAAAGAAGGAACTGCAAGGATATTTTGCTCTGTTTGTAGAGAGTATG GGAGGAAGCATCGAAGAAATCCATATGGGAATGAAGGCAGTAGAAATATGCAGATGAGTGCACTGGAAGAGCATAACAATAGTTTGCTTCACAAAGAGGC TCTTCGTCTGCAGATGGCCTCCAAGGATAAGATTGTGGTCGATAAAACCATTTATGTAAAAGCTCTTATGTCAAAAACAGCTGGATCTATTGTTGAAGCT GCACTTAAAAGGGACCCTCATGAGGTTGAGTTCATACAATCAGTGCAGGAAGCTGTTCATGCTTTAGACAGAGTTATTGCAAAAAATTCTCATTACGTCA ACATCATGGAACGCTTATTAGAACCTGAACGCATGCTTGTTTTTCGAGTGCCTTGGGTGGATGACAGGGGTGAGACACATGTCAATCGAGGTTTTCGGGT GCATTTTAACCAGGCATTGGGTCCATGTAGGGGTGGTATTCGTTTCCACCCATCAATGAACTTAAGCATTGCCAAGTTTCTTGGTTTTGGACAGACATTA AAGAATGCCTTATCGCCATACAGGCTAGGAGGGGCTGCTGGTGGAAGTGATTTTGATCCAAAAGGAAAAACTGACAATGAGATTATGCGCTTCTGCCAAA GTTTCATGAATGAGATCTATAGATATCTAGGTCCGGACAAGGACCTTCCATCAGAGGAGATGGGTGTTGGTACGAGAGAAATGGGGTATCTACTTGGACA ATATAGACGCTTAGCAGGTCATTTTCAGGGAAGTTTTACAGGGCCAAGGATATTTTGGTCTGGCTCTAGCCTTCGAACTGAAGCTACTGGCTATGGGTTG GTTTTCTTTGTGCAGCTTATGCTTGCTGACATGAATAAAGAAATCAAAGGACTAAGATGTGCTGTAAGTGGTTCTGGAAAGATTACAATGCATGTTCTAG AGAAGCTTATTGCTTATGGCGCCCTTCCGATCACAGTATCAGATTCAAAGGGATATTTGGTGGATGAGGATGGATTTGATTATGTGAAAATATCTTTTCT CAGAGATATCAAAGCGCAGCAGAGAAGTTTGAGAGACTACTCAAAGACTTATGCTCGTTCTAAGTACTATGACGAAGCAAAACCTTGGAGTGAAAGGTGT GATGTTGCATTTCCTTGTGGTTACCAGAATGAAATCGATCAATCTGATGCCATGAGTCTGGTTAATTCAGGCTGTCGTATCCTCGTTGAAGGTTCAAACA TGCCCTGTACTCCTGAAGCTGTTGATGTTTTCAAAAAAGCCAATGTTCTCATTGCTCCTGCTATAGCAGCTGGTGCTGGAGGGGTTGTTGCTGGGGAGCT TGAGTTAAACCATGAGTGCAATTTGCTGAACTGGTCACCTGAGGACTTTGAATCTAAATTGCAGGAAGCAATGAAACAGATCTACCAAAGAGCCCTGAAA GCAGCAAACGATTTTGGCTACCAAAAGGAGAGTCCTGAGGCGTTGGTGCACGGAGCTGTCATCTCTGCTTTTCTAACCATTGCTCAAGCTATGTCTGATC AAGGATGCGTATAG
AA sequence Show only first row Show all	>Potri.001G199600.6 pacid=42792021 polypeptide=Potri.001G199600.6.p locus=Potri.001G199600 ID=Potri.001G199600.6.v4.1 annot-version=v4.1 MLLPAEGIRMNSTMDDINLIQQAQRHHLVVRELGEEIDLEIGHGDDDHSFANTPIMGGRPREHSAEDNDEVKNMMASSQFSNEEQDVPKTQPVKRKKKVV KRWREEWADTYKWAYVDVKEGTARIFCSVCREYGRKHRRNPYGNEGSRNMQMSALEEHNNSLLHKEALRLQMASKDKIVVDKTIYVKALMSKTAGSIVEA ALKRDPHEVEFIQSVQEAVHALDRVIAKNSHYVNIMERLLEPERMLVFRVPWVDDRGETHVNRGFRVHFNQALGPCRGGIRFHPSMNLSIAKFLGFGQTL KNALSPYRLGGAAGGSDFDPKGKTDNEIMRFCQSFMNEIYRYLGPDKDLPSEEMGVGTREMGYLLGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGL VFFVQLMLADMNKEIKGLRCAVSGSGKITMHVLEKLIAYGALPITVSDSKGYLVDEDGFDYVKISFLRDIKAQQRSLRDYSKTYARSKYYDEAKPWSERC DVAFPCGYQNEIDQSDAMSLVNSGCRILVEGSNMPCTPEAVDVFKKANVLIAPAIAAGAGGVVAGELELNHECNLLNWSPEDFESKLQEAMKQIYQRALK AANDFGYQKESPEALVHGAVISAFLTIAQAMSDQGCV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G51720			Amino acid dehydrogenase famil...		Potri.001G199600 [exp]	0	1
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Potri.010G178600 [exp]	6.92	0.8366
AT1G72710		CKL2	casein kinase 1-like protein 2...		Potri.003G043500 [exp]	7.54	0.7490
AT1G80150			Tetratricopeptide repeat (TPR)...		Potri.003G062700 [exp]	8.48	0.7576
AT4G30790			unknown protein		Potri.006G180800 [exp]	11.40	0.7572
AT1G01790		ATKEA1, KEA1	K+ efflux antiporter 1, K+ EFF...		Potri.014G080800 [exp]	13.26	0.7529
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Potri.006G143300 [exp]	13.52	0.8028	PAFC901
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Potri.010G219600 [exp]	15.03	0.8110
AT1G27900			RNA helicase family protein (....		Potri.010G057200 [exp]	15.65	0.7854
AT4G15090	FAR1_related	FAR1	FAR-RED IMPAIRED RESPONSE 1, F...		Potri.003G110300 [exp]	15.87	0.7834
AT2G44150		SDG7, ASHH3	SET DOMAIN-CONTAINING PROTEIN ...		Potri.007G147200 [exp]	16.06	0.6901

Compare expression of checked genes

Potri.001G199600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.