Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13690 1051 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G55200 925 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G56790 787 / 0 Protein kinase superfamily protein (.1) AT3G24550 321 / 7e-100 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G26150 321 / 1e-98 ATPERK10 proline-rich extensin-like receptor kinase 10 (.1) AT1G68690 318 / 2e-98 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT1G70460 317 / 8e-98 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT3G24540 311 / 8e-98 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT5G38560 316 / 1e-97 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT1G23540 315 / 9e-97 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G034900 [exp] 1273 / 0 AT3G13690 1045 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G150100 [exp] 844 / 0 AT3G13690 773 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G130300 [exp] 587 / 0 AT1G55200 535 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.014G038300 [exp] 585 / 0 AT3G13690 537 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G185500 [exp] 353 / 1e-112 AT5G56790 348 / 1e-111 Protein kinase superfamily protein (.1) Potri.003G189850 [exp] 330 / 8e-103 AT5G56790 319 / 3e-99 Protein kinase superfamily protein (.1) Potri.001G035900 [exp] 326 / 2e-101 AT5G56790 311 / 1e-96 Protein kinase superfamily protein (.1) Potri.017G110400 [exp] 316 / 2e-97 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.004G153600 [exp] 311 / 3e-96 AT4G34440 551 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006148 [exp] 1132 / 0 AT3G13690 1084 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10001996 [exp] 658 / 0 AT3G13690 649 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10008566 [exp] 515 / 1e-174 AT1G55200 657 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10009559 [exp] 399 / 2e-127 AT3G13690 418 / 2e-134 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10040097 [exp] 396 / 9e-127 AT1G55200 444 / 5e-145 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10030950 [exp] 389 / 3e-124 AT3G13690 422 / 2e-137 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10018944 [exp] 336 / 1e-106 AT3G13690 332 / 2e-105 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10011098 [exp] 315 / 9e-98 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10023645 [exp] 312 / 6e-96 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10003066 [exp] 313 / 7e-96 AT5G38560 707 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.001G200000.9 pacid=42787880 polypeptide=Potri.001G200000.9.p locus=Potri.001G200000 ID=Potri.001G200000.9.v4.1 annot-version=v4.1 ATGAGTAGAGAACAGAAGAAGGGGAAGCAAGAGAAAGGCGGCTCGGATGTTGCTGTGAAGGTGGTTGTCGCAGTTAAAGCCTCCAAGGAGATTCCTAAGA CTGCTTTGGTCTGGGCTTTGACTCATGTTGTGCAACCTGGAGACTGCATTACTCTTCTTGTGGTTGTCCCTTCACACGCTCCAGGTCGAAGATTATGGGG ATTCCCAAGATTTGCTGCTGACTGCGCCAATGGTCACCGGAAGTCTCATTCGGGAGCAACCTCAGATCAGAGGTGTGACATTACAGATTCCTGTTCCCAG ATGATCCTTCAGCTTCATGATGTTTATGATCCAAACAAAATCAATGTGAAGATAAAAATTGTTTCTGGATCACCTTGTGGGGCAGTCTCTGCAGAAGCCA AGAAGGCGCAAGCCAACTGGGTTGTACTAGACAAACAGCTGAAGCACGAGGAAAAACGCTGCATGGAAGAGCTGCAATGCAACATAGTGGTTATGAAACG ATCCCAGGCAAAAGTCCTCCGCTTGAATCTGGTTGGAACATCAAAGGAACCTGAAGTTGTGGGCCCATCACCTTCCAAACTAAATGAAGCTTCTGAGCAG CATTCAAAAAATAAGAATAATTCTTCAGGCTCCATTCGAGGACCGGTGGTTACTCCAACAAGTAGTCCAGAGCTTGGAACACCCTTTACTGTGACTGAAG CAGGAACTTCATCAGTCTCAAGTGATCCGGGAGCTTCACCATTTTTTATCTCAGAAACAAATGGAGAACTCAAGAAAGAGGAACCACTGGTCATTAAGGA AAATAGGGATCTTGATGAATCTAGTTCAGACACAGACACTGAACATTTATCTTTGGCTTCAAGTTTAAGGTTTGAACCATGGGTAGGAGAGTTACTTGGT TCTCATATTAAATCCTCAAGACACGTAGAAGAAAGCTCTCAGAGAAGTAATTGCATGGCGCAAACATCAACAACAGAAGCTTTGCTAGAGAAGTTCTCAA AACTTGATAGACAAACAGGAATTGGAATGTCAAACTACAGGACTGATCTAGACTTGAGTGTAAACGTGAGAGAGGCAATATCATTATCCAGAAATACGCC TCCTGGCCCGCCTCCTTTGTGTTCGATATGTCAGCATAAGGCACCTGTATTTGGGAAGCCCCCAAGGTGGTTTAGCTATGCTGAGTTGGAGCTTGCTACT GGAGGATTTTCGCAAGCCAATTTCTTGGCAGAGGGTGGGTTTGGATCTGTTCACAGAGGTGTATTGCCAGATGGCCAGGCAGTTGCTGTCAAGCAGCACA AATTGGCTAGCTCACAGGGGGATGTAGAATTTTGCTCAGAGGTGGAAGTCCTTAGCTGTGCTCAGCATCGAAATGTTGTTATGCTCATCGGGTTTTGTAT TGAGGACAGAAGGAGGTTGTTAGTTTATGAATATATATGCAACGGGTCACTAGATTCTCATCTGTATGGGCATCATAGGGAGCCATTAGAATGGTCCGCG CGCCAGAAGATTGCAGTAGGAGCTGCTCGAGGGTTACGTTATCTTCATGAAGAATGCAGAGTAGGTTGCATAGTCCATCGTGATATGCGGCCAAACAACA TTCTCATAACCCATGATTTTGAACCCCTGGTTGGAGATTTTGGCCTAGCAAGGTGGCAGCCTGATGGCGATACTGGTGTTGAAACAAGAGTGATCGGAAC ATTTGGGTATTTGGCTCCAGAATATGCTGAAACCGGTCAAATCACAGAAAAAGCTGATGTTTATTCCTTTGGAGTAGTTTTGGTCGAGCTTGTTACAGGA CGAAAGGCAGTGGACCTCAACCGGCCAAAGGGCCAGCAGTGTCTCACGGAATGGGCGCGCCCTCTATTGGAAGAATATGCCATAGTGGAACTGATTGACC CACAGCTTGGCAATCACTATTCAGAACAGGAGGTCTACTGCATGCTCCATGCAGCATCGATATGCATACGACGGGATCCTCATTCCAGGCCTCGTATGTC TCAGGTTCTCCGCATACTAGAAGGTGACATGCATGTTGACACGAATTACATGTCAGCACCCGGGTATGATGTGGGGAACCGGAGTGGAAGGATTTACATA GATAGAACAGCAGCAGCAGCAGCCGCCATCAAAACATTATGGTGTTCTGCTGTCAACGAATGA
AA sequence Show only first row Show all	>Potri.001G200000.9 pacid=42787880 polypeptide=Potri.001G200000.9.p locus=Potri.001G200000 ID=Potri.001G200000.9.v4.1 annot-version=v4.1 MSREQKKGKQEKGGSDVAVKVVVAVKASKEIPKTALVWALTHVVQPGDCITLLVVVPSHAPGRRLWGFPRFAADCANGHRKSHSGATSDQRCDITDSCSQ MILQLHDVYDPNKINVKIKIVSGSPCGAVSAEAKKAQANWVVLDKQLKHEEKRCMEELQCNIVVMKRSQAKVLRLNLVGTSKEPEVVGPSPSKLNEASEQ HSKNKNNSSGSIRGPVVTPTSSPELGTPFTVTEAGTSSVSSDPGASPFFISETNGELKKEEPLVIKENRDLDESSSDTDTEHLSLASSLRFEPWVGELLG SHIKSSRHVEESSQRSNCMAQTSTTEALLEKFSKLDRQTGIGMSNYRTDLDLSVNVREAISLSRNTPPGPPPLCSICQHKAPVFGKPPRWFSYAELELAT GGFSQANFLAEGGFGSVHRGVLPDGQAVAVKQHKLASSQGDVEFCSEVEVLSCAQHRNVVMLIGFCIEDRRRLLVYEYICNGSLDSHLYGHHREPLEWSA RQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAETGQITEKADVYSFGVVLVELVTG RKAVDLNRPKGQQCLTEWARPLLEEYAIVELIDPQLGNHYSEQEVYCMLHAASICIRRDPHSRPRMSQVLRILEGDMHVDTNYMSAPGYDVGNRSGRIYI DRTAAAAAAIKTLWCSAVNE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13690			Protein kinase protein with ad...		Potri.001G200000 [exp]	0	1
AT5G66560			Phototropic-responsive NPH3 fa...		Potri.005G130700 [exp]	3.60	0.7067
AT3G19180		ATCDP1, ARC6H, ...	A. THALIANA CHLOROPLAST DIVISI...		Potri.012G035900 [exp]	10.09	0.6874
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.009G020400 [exp]	14.00	0.6655
AT4G38280			unknown protein		Potri.009G166100 [exp]	33.46	0.5996
					Potri.004G114450 [exp]	45.36	0.6526
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Potri.010G091800 [exp]	48.37	0.5835
AT5G13140			Pollen Ole e 1 allergen and ex...		Potri.001G060500 [exp]	48.73	0.6101
AT1G31420		FEI1	FEI 1, Leucine-rich repeat pro...		Potri.001G129000 [exp]	50.36	0.5847
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Potri.015G012600 [exp]	55.09	0.5942
AT1G08260		ESD7, EMB142, E...	TILTED 1, EARLY IN SHORT DAYS ...		Potri.004G185700 [exp]	66.09	0.6148

Compare expression of checked genes

Potri.001G200000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.