Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CYP90.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13730 662 / 0 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) AT4G36380 530 / 0 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) AT5G05690 378 / 5e-127 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT3G50660 315 / 6e-102 PSC1, CYP90B1, CLM, SNP2, DWF4, SAV1 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) AT5G38970 297 / 1e-95 ATBR6OX, CYP85A1, BR6OX1 brassinosteroid-6-oxidase 1 (.1.2.3) AT1G73340 291 / 1e-92 Cytochrome P450 superfamily protein (.1) AT3G30180 287 / 8e-92 CYP85A2, BR6OX2 brassinosteroid-6-oxidase 2 (.1) AT4G19230 266 / 1e-83 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT5G45340 262 / 4e-82 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT1G12740 259 / 4e-81 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G038200 [exp] 867 / 0 AT3G13730 662 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.007G018400 [exp] 528 / 0 AT4G36380 626 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Potri.010G189800 [exp] 369 / 1e-123 AT5G05690 717 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.008G067500 [exp] 365 / 5e-122 AT5G05690 710 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.007G026500 [exp] 322 / 3e-105 AT3G50660 757 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.005G124000 [exp] 320 / 2e-104 AT3G50660 738 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.001G341000 [exp] 300 / 9e-97 AT5G14400 424 / 6e-147 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) Potri.017G154600 [exp] 300 / 1e-96 AT1G73340 714 / 0.0 Cytochrome P450 superfamily protein (.1) Potri.014G171700 [exp] 297 / 1e-95 AT3G50660 408 / 1e-138 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028345 [exp] 519 / 0 AT4G36380 652 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Lus10041794 [exp] 518 / 0 AT4G36380 643 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Lus10006152 [exp] 442 / 2e-153 AT3G13730 378 / 2e-128 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Lus10040193 [exp] 366 / 4e-122 AT5G05690 687 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10014850 [exp] 362 / 2e-120 AT5G05690 679 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10005075 [exp] 287 / 4e-92 AT5G38970 644 / 0.0 brassinosteroid-6-oxidase 1 (.1.2.3) Lus10034377 [exp] 285 / 3e-91 AT5G38970 648 / 0.0 brassinosteroid-6-oxidase 1 (.1.2.3) Lus10000647 [exp] 285 / 6e-91 AT3G30180 540 / 0.0 brassinosteroid-6-oxidase 2 (.1) Lus10016065 [exp] 286 / 8e-91 AT3G50660 399 / 3e-134 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Lus10014240 [exp] 282 / 7e-90 AT3G30180 531 / 0.0 brassinosteroid-6-oxidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.001G200100.1 pacid=42789176 polypeptide=Potri.001G200100.1.p locus=Potri.001G200100 ID=Potri.001G200100.1.v4.1 annot-version=v4.1 ATGAATATTAACACGGACAATTTATTGTGGATTGCGTTAGCAATCTCGTTGTCCAGTACTGCCATAATATTTCTCTACAGGAACAGCAGCTGGTTTAGTA GCAGTAGTATGATGACGATCAGATTATCATCATCAAAGTACAAAACCCCACTTCCTTTAGGCACTCTTGGATGGCCCTTTATCGGTGAAACCATCGACTT CGTTTCATGTGCTTACTCAGACCGCCCTGAAAGCTTCATGGATAAACGCCGTCGCATGTATGGGAAGGTGTTCAAGTCACATATATTTGGAAGTCCGACT ATAGTATCAACAGATGCAGAAGTGAGCAAATTTATACTACAAAGTGATGCAAAGGTGTTCGTTCCTTCTTACCCGAAATCTCTAACCGAGTTGATGGGAA AATCTTCCATTTTGCTCATCAATGGGAGCTTACAAAGGAGAATTCATGGTCTCATAGGTGCCTTCTTCAAATCCCCTCATCTCAAAGCTCAAATCACCCG AGACATGCAAAGTTATGTTCAAGAATCAATGGAGAAATGGAGAGAAGACCAGCCCATTTTCATACAAGATGAAACCAAGAATATTGCCTTTCAAGTATTA GTCAAGGCATTGATTAGTTTGGATCCTGGTGAAGAAATGGAGCTGCTAAAGAAACAGTTCCAAGAATTCATTGCTGGTCTCATGTCCTTACCTTTAAACA TCCCTGGAAGTCAACTTTATCGATCATTACAGGCAAAGAAGAAAATGGTGAAGTTAGTGCAGAAAATCATCCAATCTAAAAGAGAAGGTAGAGCTGGGAT TGTTTCAATGGCACCAAAGGATGTAGCGGAAGTGTTGCTTAATGATGCAAGTGAACAGTTAACAGATGATTTAATAGCTGATAATATGATCGATATGATG ATACCTGGTGAGGATTCAGTGCCGGTCCTCATGACTCTTGCTGTTAAGTACCTTTCAGATTGCCCTGCTGCTCTGCAACAATTGACGAAGGAGAACATGA AATTGAAAAGTCTCAAAGCTCAGCATGGGGAGCCATTGTGCTGGACTGATTATTTATCTCTACCCTTTACTCAAACGGTGATCACAGAAACTCTAAGAAT GGGAAACATAATAATCGGGGTGATGAGAAAGGCGATGAAGGACACAGAAATTAAAGGGTATTTGATACCCAAAGGATGGTGTGCTTTTGCATATTTCAGG TCAGTTCATCTTGATGAAAACAACTATGAGTGGCCTTACGAATTCAATCCATGGAGGTGGCAAGACAAGGATATGAGCATTAATGGCAGCTTCACTCCAT TTGGAGGAGGACAAAGATTATGTCCTGGACTTGACCTCGCCAGGCTGGAAGCTTCAATCTTCTTGCACCACTTTGTCACCCAGTTCAGGTGGGTGGCTGA GGAGGATACTGTAGTGAATTTCCCTACTGTAAGAATGAAGAGAAGAATGCCGATTTGGGTCAAAAGGGGAGGAGAAAATTAA
AA sequence Show only first row Show all	>Potri.001G200100.1 pacid=42789176 polypeptide=Potri.001G200100.1.p locus=Potri.001G200100 ID=Potri.001G200100.1.v4.1 annot-version=v4.1 MNINTDNLLWIALAISLSSTAIIFLYRNSSWFSSSSMMTIRLSSSKYKTPLPLGTLGWPFIGETIDFVSCAYSDRPESFMDKRRRMYGKVFKSHIFGSPT IVSTDAEVSKFILQSDAKVFVPSYPKSLTELMGKSSILLINGSLQRRIHGLIGAFFKSPHLKAQITRDMQSYVQESMEKWREDQPIFIQDETKNIAFQVL VKALISLDPGEEMELLKKQFQEFIAGLMSLPLNIPGSQLYRSLQAKKKMVKLVQKIIQSKREGRAGIVSMAPKDVAEVLLNDASEQLTDDLIADNMIDMM IPGEDSVPVLMTLAVKYLSDCPAALQQLTKENMKLKSLKAQHGEPLCWTDYLSLPFTQTVITETLRMGNIIIGVMRKAMKDTEIKGYLIPKGWCAFAYFR SVHLDENNYEWPYEFNPWRWQDKDMSINGSFTPFGGGQRLCPGLDLARLEASIFLHHFVTQFRWVAEEDTVVNFPTVRMKRRMPIWVKRGGEN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13730		CYP90D1	"cytochrome P450, family 90, s...		Potri.001G200100 [exp]	0	1	CYP90.1
					Potri.001G131500 [exp]	1.73	0.8734
					Potri.006G276750 [exp]	2.44	0.8929
AT2G21540		ATSFH3	SEC14-like 3 (.1.2.3)		Potri.004G157600 [exp]	5.09	0.8884	Pt-SEC14.2
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Potri.010G201500 [exp]	5.29	0.8509
AT2G34580			unknown protein		Potri.004G132600 [exp]	7.74	0.8488
AT4G24530			O-fucosyltransferase family pr...		Potri.002G105800 [exp]	10.58	0.8045
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Potri.017G056201 [exp]	10.90	0.8463
AT5G59100			Subtilisin-like serine endopep...		Potri.009G037900 [exp]	11.61	0.8449
AT5G51720			2 iron, 2 sulfur cluster bindi...		Potri.015G132500 [exp]	14.07	0.7940
AT2G44520		COX10	cytochrome c oxidase 10 (.1)		Potri.002G216100 [exp]	14.42	0.7283

Compare expression of checked genes

Potri.001G200100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.