Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55140 258 / 6e-87 Ribonuclease III family protein (.1.2) AT3G13740 241 / 2e-80 Ribonuclease III family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G038400 [exp] 190 / 1e-61 AT1G55140 154 / 6e-48 Ribonuclease III family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037645 [exp] 260 / 1e-87 AT1G55140 274 / 4e-93 Ribonuclease III family protein (.1.2) Lus10015626 [exp] 253 / 7e-85 AT1G55140 271 / 5e-92 Ribonuclease III family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G200300.1 pacid=42792681 polypeptide=Potri.001G200300.1.p locus=Potri.001G200300 ID=Potri.001G200300.1.v4.1 annot-version=v4.1 ATGGCAACAGCAGTAGGATCCATGAATGTGGATGTGTTATCTAGAAGAGTAAGAGTAAGAGCTGCTTCAGTGGACACTCAACAAAGACTCTCTTACAATC CCAATGCTCCGAAAAACCCCTTCAAAAACCTCAATCCTAAACCCAACAATTTTGTTCCCACAAGTACTGCTCCTGCTCCCTCCTCAACTGTCACTTTAAC TGCTCAGACAGTTTCTGGGCTTCTCAAACGCACGACTGTTATTGTTCAAGAACAATTGAATGATTCATATCTGGGATATGAGAGGTGGCTGCCGAGTCCG CCCAAAGTGGAGAAGCCTCGATCAGTGTTTAATGCTGCGACTTTGGCATATATTGGTGATAGTATATTCGAGCTATATGCTCGTAGGCACTTTTTGTTTC CTCCATTGAGTATTGAGGAACATAATGACCGTGTGATGGCAGTTGTACGCTGTGAAGCACAGGACGCGTTGCTCCAGAAGCTTCTTAATGATAATTACCT ATCAGAGGAAGAAAGGCTTATTCTTCGTTGGGGAAAGAATGTAGGTTCGACTAAAACACGGACAAAAAGACGTGTTGGGGTAGCAGTTTACAACCGAGCA TCTTCACTGGAAACATTAGTCGGTTTTCTCTACCTGACAAATGTAAGTCGTTTGGAAGAAGTCATGCTAAAGTTGGGATTCTCAACTGATTCTTCTACAC AAATGATTCCGGAGGAAGAAAATAGTAAGTCAACTATCTAG
AA sequence Show only first row Show all	>Potri.001G200300.1 pacid=42792681 polypeptide=Potri.001G200300.1.p locus=Potri.001G200300 ID=Potri.001G200300.1.v4.1 annot-version=v4.1 MATAVGSMNVDVLSRRVRVRAASVDTQQRLSYNPNAPKNPFKNLNPKPNNFVPTSTAPAPSSTVTLTAQTVSGLLKRTTVIVQEQLNDSYLGYERWLPSP PKVEKPRSVFNAATLAYIGDSIFELYARRHFLFPPLSIEEHNDRVMAVVRCEAQDALLQKLLNDNYLSEEERLILRWGKNVGSTKTRTKRRVGVAVYNRA SSLETLVGFLYLTNVSRLEEVMLKLGFSTDSSTQMIPEEENSKSTI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55140			Ribonuclease III family protei...		Potri.001G200300 [exp]	0	1
AT3G25480			Rhodanese/Cell cycle control p...		Potri.002G239800 [exp]	1.73	0.9704
AT3G55250		PDE329	PIGMENT DEFECTIVE 329, unknown...		Potri.017G073000 [exp]	2.00	0.9625
AT4G13200			unknown protein		Potri.002G241000 [exp]	2.82	0.9569
AT2G34460			NAD(P)-binding Rossmann-fold s...		Potri.011G079600 [exp]	3.00	0.9628
AT1G56050			GTP-binding protein-related (....		Potri.001G457900 [exp]	3.16	0.9598
AT1G56200		EMB1303	embryo defective 1303 (.1.2)		Potri.011G163900 [exp]	4.24	0.9545
AT4G25370			Double Clp-N motif protein (.1...		Potri.015G131700 [exp]	10.00	0.9473
AT1G11430			plastid developmental protein ...		Potri.011G032900 [exp]	10.67	0.9661
AT1G09900			Pentatricopeptide repeat (PPR-...		Potri.002G109500 [exp]	19.44	0.9580
AT1G06190			Rho termination factor (.1.2)		Potri.002G037800 [exp]	21.35	0.9532

Compare expression of checked genes

Potri.001G200300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.