Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	BGAL1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13750 1471 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT4G36360 1140 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT4G26140 1066 / 0 BGAL12 beta-galactosidase 12 (.1.2) AT5G56870 1036 / 0 BGAL4 beta-galactosidase 4 (.1) AT3G52840 1025 / 0 BGAL2 beta-galactosidase 2 (.1) AT1G45130 1009 / 0 BGAL5 beta-galactosidase 5 (.1) AT2G28470 927 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT2G32810 850 / 0 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT5G63810 802 / 0 BGAL10 beta-galactosidase 10 (.1) AT5G20710 757 / 0 BGAL7 beta-galactosidase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G038500 [exp] 1644 / 0 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.006G144500 [exp] 1291 / 0 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.005G232600 [exp] 1159 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.007G018100 [exp] 1147 / 0 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.004G159800 [exp] 1031 / 0 AT4G36360 1137 / 0.0 beta-galactosidase 3 (.1.2) Potri.009G012400 [exp] 915 / 0 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.007G099800 [exp] 914 / 0 AT5G63810 1083 / 0.0 beta-galactosidase 10 (.1) Potri.017G057900 [exp] 881 / 0 AT2G32810 1351 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2) Potri.011G044300 [exp] 863 / 0 AT2G28470 993 / 0.0 beta-galactosidase 8 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000701 [exp] 1479 / 0 AT3G13750 1481 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10015625 [exp] 1439 / 0 AT3G13750 1417 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10037644 [exp] 1438 / 0 AT3G13750 1432 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10025980 [exp] 1124 / 0 AT4G36360 1422 / 0.0 beta-galactosidase 3 (.1.2) Lus10041798 [exp] 1118 / 0 AT4G36360 1443 / 0.0 beta-galactosidase 3 (.1.2) Lus10006009 [exp] 1049 / 0 AT4G26140 1080 / 0.0 beta-galactosidase 12 (.1.2) Lus10028348 [exp] 1041 / 0 AT4G36360 1348 / 0.0 beta-galactosidase 3 (.1.2) Lus10028848 [exp] 1029 / 0 AT4G26140 1080 / 0.0 beta-galactosidase 12 (.1.2) Lus10008974 [exp] 1017 / 0 AT4G26140 1068 / 0.0 beta-galactosidase 12 (.1.2) Lus10024292 [exp] 975 / 0 AT1G45130 1128 / 0.0 beta-galactosidase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF01301 [poplar] [flax] Glyco_hydro_35 Glycosyl hydrolases family 35 CL0058 [poplar] [flax] PF02140 [poplar] [flax] Gal_Lectin Galactose binding lectin domain
Representative CDS sequence Show only first row Show all	>Potri.001G200400.3 pacid=42790094 polypeptide=Potri.001G200400.3.p locus=Potri.001G200400 ID=Potri.001G200400.3.v4.1 annot-version=v4.1 ATGGCCTTGAAGAAGATACCAATGTCCAATGATAATGCGTCGGTAGTTTTTCTGGTTTTTTTGGCTTCATTGGTTTGTTCTGTCACTGCCTCTGTGTCTT ATGACTCTAAGGCTATCACCATTAATGGCCAAAGAAGGATTCTTATTTCCGGATCCATTCACTACCCAAGAAGTTCCCCTGAGATGTGGCCAGATCTTAT TCAGAAGGCAAAAGAAGGAGGACTGGATGTTATTCAGACATATGTTTTTTGGAATGGACATGAACCTTCACCTGGAAAATATTATTTTGAGGGGAACTAT GATCTGGTCAAGTTTGTTAAGCTGGTGAAGGAAGCAGGCCTTTATGTTAATCTCAGGATTGGACCTTATATCTGTGCTGAGTGGAACTTTGGGGGTTTCC CAGTTTGGCTTAAGTACATTCCAGGCATCAATTTCAGAACGGACAATGGCCCTTTCAAGGCTCAAATGCGAAAATTCACCACGAAGATTGTTAACATGAT GAAAGCAGAAAGGTTATTTGAGTCTCAAGGCGGTCCAATAATTTTATCCCAGATTGAGAATGAATATGGACCCATGGAATATGAACTTGGTTCACCTGGT CAAGCTTACACCAAGTGGGCTGCACAAATGGCTGTAGGTCTCCGTACTGGTGTCCCATGGGTCATGTGCAAGCAAGATGATGCCCCGGATCCTATTATTA ACACCTGCAATGGTTTCTACTGCGACTACTTTTCTCCAAACAAAGCTTACAAGCCAAAGATGTGGACTGAAGCTTGGACTGGCTGGTTTACCCAATTTGG TGGCCCAGTTCCTCACCGACCAGCTGAAGACATGGCTTTCTCCGTTGCAAGGTTCATACAGAAGGGGGGATCATTCATAAATTATTATATGTATCATGGA GGAACAAATTTTGGCCGAACTGCTGGTGGTCCTTTCATTGCAACAAGCTATGATTATGATGCTCCTCTTGATGAATATGGACTGTTGCGGCAGCCTAAAT GGGGCCATTTGAAAGATTTGCATAGAGCAATTAAGCTGTGTGAACCTGCTTTAGTATCTGGAGATGCAACTGTTATACCACTTGGAAATTACCAAGAGGC TCACGTGTTCAATTATAAGGCTGGAGGTTGCGCAGCATTCCTTGCAAATTACCATCAAAGATCATTTGCAAAGGTGTCTTTTAGGAATATGCATTATAAC CTACCACCATGGTCCATCAGCATTCTTCCAGATTGCAAGAACACCGTTTACAACACTGCAAGGGTTGGTGCTCAAAGTGCAACGATCAAGATGACTCCTG TTCCTATGCATGGAGGCTTGTCTTGGCAAACGTATAATGAAGAGCCATCCTCAAGTGGTGACAACACATTCACTATGGTTGGGTTGCTGGAGCAGATAAA TACAACTAGAGATGTTTCAGACTATTTGTGGTACATGACAGATGTTCATATTGACCCCAGCGAAGGCTTTCTGAAGAGTGGCAAATATCCTGTTCTTACT GTTCTATCAGCTGGGCATGCTTTGCATGTTTTCATCAATGGCCAGCTATCTGGGACTGCCTATGGAAGTTTAGACTTCCCAAAGTTGACATTTAGTCAAG GTGTGAGTTTGAGAGCTGGTGTCAACAAAATTTCTCTTCTGAGCATTGCTGTTGGTCTCCCGAATGTTGGCCCACACTTTGAGACATGGAATGCTGGTAT TCTTGGACCTGTGACATTGAATGGTCTCAATGAGGGGAGGATGGACTTGTCCTGGCAGAAGTGGTCTTACAAGATTGGTCTTCATGGAGAAGCATTGAGT CTCCATTCAATCAGTGGGAGTTCTTCAGTTGAGTGGGCAGAGGGGTCTCTGGTGGCCCAAAAACAGCCACTCTCATGGTATAAAACTACTTTCAATGCTC CTGCTGGGAATTCCCCTTTGGCTTTAGATATGGGCAGCATGGGCAAAGGCCAAATATGGATAAATGGACAGCATGTTGGACGTCACTGGCCTGCATATAA AGCATCTGGAACATGCGGGGAATGTACTTACATTGGAACTTATAATGAAAATAAATGCTCAACTAATTGTGGCGAGGCTTCCCAGAGATGGTATCACGTC CCTCAATCATGGCTAAAACCAACAGGGAACTTGTTGGTTGTGTTTGAAGAATGGGGTGGAGATCCAAATGGGGTTTCTTTGGTTAGGAGAGAAGTAGACA GTGTGTGCGCTGATATTTATGAGTGGCAGCCAACTTTGATGAATTATCAGATGCAAGCATCTGGTAAAGTCAATAAGCCGCTGAGGCCTAAAGCCCATTT GTCATGTGGCCCTGGACAGAAAATCAGATCAATCAAGTTTGCCAGCTTTGGGACACCAGAAGGGGTTTGTGGAAGCTACAACCAGGGAAGCTGTCATGCC TTCCACTCTTACGATGCTTTTAACAATCTTTGTGTTGGGCAGAACTCATGCTCGGTGACCGTAGCACCTGAAATGTTTGGGGGAGATCCTTGCCCGAGTG TCATGAAGAAACTAGCAGCAGAGGCTATTTGCAGCTGA
AA sequence Show only first row Show all	>Potri.001G200400.3 pacid=42790094 polypeptide=Potri.001G200400.3.p locus=Potri.001G200400 ID=Potri.001G200400.3.v4.1 annot-version=v4.1 MALKKIPMSNDNASVVFLVFLASLVCSVTASVSYDSKAITINGQRRILISGSIHYPRSSPEMWPDLIQKAKEGGLDVIQTYVFWNGHEPSPGKYYFEGNY DLVKFVKLVKEAGLYVNLRIGPYICAEWNFGGFPVWLKYIPGINFRTDNGPFKAQMRKFTTKIVNMMKAERLFESQGGPIILSQIENEYGPMEYELGSPG QAYTKWAAQMAVGLRTGVPWVMCKQDDAPDPIINTCNGFYCDYFSPNKAYKPKMWTEAWTGWFTQFGGPVPHRPAEDMAFSVARFIQKGGSFINYYMYHG GTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLCEPALVSGDATVIPLGNYQEAHVFNYKAGGCAAFLANYHQRSFAKVSFRNMHYN LPPWSISILPDCKNTVYNTARVGAQSATIKMTPVPMHGGLSWQTYNEEPSSSGDNTFTMVGLLEQINTTRDVSDYLWYMTDVHIDPSEGFLKSGKYPVLT VLSAGHALHVFINGQLSGTAYGSLDFPKLTFSQGVSLRAGVNKISLLSIAVGLPNVGPHFETWNAGILGPVTLNGLNEGRMDLSWQKWSYKIGLHGEALS LHSISGSSSVEWAEGSLVAQKQPLSWYKTTFNAPAGNSPLALDMGSMGKGQIWINGQHVGRHWPAYKASGTCGECTYIGTYNENKCSTNCGEASQRWYHV PQSWLKPTGNLLVVFEEWGGDPNGVSLVRREVDSVCADIYEWQPTLMNYQMQASGKVNKPLRPKAHLSCGPGQKIRSIKFASFGTPEGVCGSYNQGSCHA FHSYDAFNNLCVGQNSCSVTVAPEMFGGDPCPSVMKKLAAEAICS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13750		BGAL1	beta-galactosidase 1, beta gal...		Potri.001G200400 [exp]	0	1	BGAL1.1
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Potri.019G103900 [exp]	1.41	0.8892
AT3G13560			O-Glycosyl hydrolases family 1...		Potri.001G006500 [exp]	2.00	0.8979
AT1G09010			glycoside hydrolase family 2 p...		Potri.013G021200 [exp]	3.00	0.8369
AT2G34190			Xanthine/uracil permease famil...		Potri.004G058800 [exp]	5.65	0.8564
AT1G30280			Chaperone DnaJ-domain superfam...		Potri.011G081500 [exp]	7.74	0.8368
AT4G16650			O-fucosyltransferase family pr...		Potri.003G077500 [exp]	8.60	0.7963
AT5G28150			Plant protein of unknown funct...		Potri.013G038000 [exp]	9.48	0.8114
AT1G01225			NC domain-containing protein-r...		Potri.002G174700 [exp]	9.59	0.8077
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Potri.010G055900 [exp]	10.39	0.8769
AT5G04310			Pectin lyase-like superfamily ...		Potri.010G229000 [exp]	11.31	0.8150

Compare expression of checked genes

Potri.001G200400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.