Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15750 1922 / 0 TPL, WSIP1 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) AT1G80490 1914 / 0 TPR1 TOPLESS-related 1 (.1.2) AT3G15880 1585 / 0 WSIP2, TPR4 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) AT3G16830 1375 / 0 TPR2 TOPLESS-related 2 (.1) AT5G27030 1333 / 0 TPR3 TOPLESS-related 3 (.1.2) AT2G25420 228 / 1e-62 transducin family protein / WD-40 repeat family protein (.1) AT3G49660 71 / 9e-13 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 62 / 3e-09 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT2G43770 57 / 3e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 56 / 1e-07 TAF5 TBP-associated factor 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G030000 [exp] 2105 / 0 AT1G80490 1922 / 0.0 TOPLESS-related 1 (.1.2) Potri.006G066800 [exp] 1631 / 0 AT3G15880 1689 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Potri.018G128000 [exp] 1628 / 0 AT3G15880 1650 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Potri.006G257900 [exp] 1469 / 0 AT1G80490 1466 / 0.0 TOPLESS-related 1 (.1.2) Potri.013G081300 [exp] 1463 / 0 AT1G15750 1540 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Potri.018G023900 [exp] 1451 / 0 AT1G80490 1420 / 0.0 TOPLESS-related 1 (.1.2) Potri.005G021700 [exp] 1380 / 0 AT5G27030 1714 / 0.0 TOPLESS-related 3 (.1.2) Potri.013G012100 [exp] 1359 / 0 AT5G27030 1698 / 0.0 TOPLESS-related 3 (.1.2) Potri.018G023800 [exp] 1212 / 0 AT1G80490 1195 / 0.0 TOPLESS-related 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011481 [exp] 1993 / 0 AT1G15750 2011 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10023119 [exp] 1932 / 0 AT1G15750 1959 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10043258 [exp] 1623 / 0 AT3G15880 1776 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Lus10029876 [exp] 1343 / 0 AT5G27030 1722 / 0.0 TOPLESS-related 3 (.1.2) Lus10020668 [exp] 1340 / 0 AT5G27030 1717 / 0.0 TOPLESS-related 3 (.1.2) Lus10038094 [exp] 1300 / 0 AT1G80490 1525 / 0.0 TOPLESS-related 1 (.1.2) Lus10019401 [exp] 1005 / 0 AT1G15750 1596 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10006650 [exp] 969 / 0 AT1G15750 1593 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10011905 [exp] 856 / 0 AT3G15880 920 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Lus10001951 [exp] 722 / 0 AT1G15750 1007 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.001G200500.4 pacid=42792690 polypeptide=Potri.001G200500.4.p locus=Potri.001G200500 ID=Potri.001G200500.4.v4.1 annot-version=v4.1 ATGTCTTCTCTCAGTCGAGAGCTTGTTTTCCTGATCTTGCAGTTCCTTGATGAGGAAAAGTTCAAAGAGACTGTTCATAAGCTTGAGCAGGAATCTGGAT TTTTCTTTAACATGAAGTATTTTGAGGATGAGGTGCATAATGGAAATTGGGACGAGGTGGAGAAATACCTATCTGGTTTCACTAAAGTGGATGATAATCG ATATTCAATGAAAATATTTTTCGAGATAAGGAAGCAAAAGTATCTCGAAGCTTTGGATAAGCATGATCGGTCCATGGCAGTTGAAATATTGGTGAAGGAT TTGAAAGTGTTTTCCACATTCAACGAGGAGCTTTTCAAGGAAATCACTCAACTACTGACATTGGAGAATTTTAGGGAGAATGAGCAACTCTCCAAATATG GAGATACCAAGTCGGCGAGAGCAATCATGTTGGTGGAACTGAAGAAGCTTATCGAAGCAAATCCCTTGTTTCGTGACAAATTGCAGTTTCCTAACCTTAA GAATTCAAGGCTACGAACTCTCATTAACCAAAGCTTGAATTGGCAGCACCAACTTTGTAAAAACCCAAGGTCAAACCCAGATATAAAGACTCTTTTTGTT GATCATTCATGTGGACAACCAAATGGTGCTCGGGCTCCATCACCTGCAAACAATCCATTGCTTGGCTCCTTACCAAAAGCTGGAGGGTTTCCTCCATTGG GTGCACATGGGCCATTTCAACCTGCACCAGCACCAGTCCCAGCACCTCTTGCAGGTTGGATGTCCACTCCTTCCACAGTAACTCATTCTGCAGTCTCTGG AGGAGGAGCCATTGGTCTTGGTGCTCCATCAATCCCAGCTGCTCTGAAGCATCCACGAACTCCTCCAACTAACCTTTCCGTAGATTACCCTTCAGGAGAT TCTGACCATGTTGCTAAAAGAGTAAGGCCCATGGGGATTTCTGATGAGGTAAATTTGCCGGTTAATGTGTTGCCAGTATCATTTCCAGGGCATGGTCATG GTCATGGCCATGGTCAGGCTTTTAATGCACCGGATGACTTGCCAAAGGTCGTTGCACGGACTCTGAATCAGGGATCATCTCCTATGAGCATGGATTTCCA TCCTCTTCAACTGACTCTTCTTCTAGTTGGCACCAATGTTGGGGACATTGGGCTGTGGGAAGTTGGTTCTAGGGAGCGACTGGTTTTAAGAATCTTCAAA GTTTGGGATCTGAATGCTTGTTCGATGCCTCTTCAGGCAGCTTTAGCCAAAGATCCTGGTGTCTCGGTTAACCGTGTAATTTGGAGTCCGGATGGTTCCT TATTTGGAGTTGCATACTCAAGGCATATTGTACAAATATATTCTTATCATGGGAATGATGAAGTGCGTCAGCATCTGGAGATTGATGCTCATGTTGGTGG AGTTAATGATCTTGCATTCTCCACTCCGAATAAGCAACTCTGTGTAATAACCTGTGGTGATGACAAAACCATTAAGGTGTGGGATGCTTCCACTGGTGCA AAACTGTATACTTTTGAAGGTCATGAGGCTCCTGTTTATTCCATTTGCCCGCATTATAAGGAAAACATTCAGTTTATATTTTCAACAGCACTGGATGGAA AGATAAAAGCATGGTTATATGACAATTTGGGATCTCGAGTTGATTATGAGGCTCCTGGTCGCTGGTGCACAACCATGGCTTACAGTGCTGATGGTACAAG GCTATTTTCTTGCGGTACAAGTAAAGATGGGGATTCATTTATTGTTGAATGGAATGAAAGTGAAGGTGCTGTGAAAAGAACCTATCTTGGATTTAGAAAA CAATCTTGGGGTGTCGTGCAATTTGATACCACAAAGAATCGTTTTTTGGCTGCTGGTGATGATTTCTCCATCAAGTTCTGGGATATGGACAGTGTTCAAC TTCTGACAACAATTGATGCTGATGGAGGTCTCCCAGCGAGCCCACGTATCCGCTTCAACAAGGATGGCACTCTTTTGGCTGTTTCTGCGAATGATAATGG GATTAAAATATTGGCAAATACAGATGGCATTAGGTTGTTGCGTACATTTGAAAATCTTTCTTTCGATGCCTCACGAACATCTGAATCCATTGCGAAGCCT ACTGTTAACCCAATCTCAGCTGCAGCGGTGGCGGCAGCAGCAGCTGCTGCAACCAGCACTGGTCTTGCAGACAGGAGTGCCTCTGTGGTTGCCATTGCTG GAATGAATGGAGATGCCAGGAACTTGGGAGATGTGAAACCTCGATTAACTGAAGAATCCAATGATAAATCAAAGATATGGAAGCTCACTGAAATCAATGA ACCATCTCAATGCCGGTCCTTGAGGCTCCCTGAAAACTTGAGAGTAACCAAGATATCAAGGTTAATCTATACAAACTCTGGCAATGCCATTTTGGCATTA GCTTCAAATGCAATACACCTATTATGGAAATGGCAACGCAGTGATCGGAATGCTAGTGGCAAGGCAACTGCAGGTGTGTCACCTCAATTATGGCAACCAT CAAGTGGGATTCTGATGACCAATGACAGCACTGACACTAACCCTGAAGAGGCTGTGCCCTGTTTTGCTTTGTCCAAAAATGATTCTTATGTTATGTCAGC ATCCGGAGGAAAGATTTCCCTTTTCAATATGATGACATTTAAGACGATGACAACTTTCATGCCACCACCTCCTGCAGCAACCTTTCTTGCTTTTCATCCT CAAGATAACAACATAATTGCTATTGGCATGGATGATTCCACAATTCAAATATATAATGTCCGCGTAGACGAGGTCAAGAGCAAGCTCAAAGGCCACTCTA AAAGAATAACTGGCCTTGCCTTTTCCCATGTGTTGAACATGCTAGTCTCATCAGGAGCAGATGCTCAGCTTTGTGTATGGAACTCTGATGGATGGGAAAA GCAGAAAGCAAGATTCTTGCAGGTCCCAGCTGGAAGGACACCAACAGCACAATCAGACACTCGTGTACAATTTCATCAGGACCAGATACATTTCCTGGTT GTGCATGAGACTCAGCTTGCCATATATGAAACCACAAAGCTAGAATGTGTAAAGCAGTGGGTTCTACGTGAATCTTCTGCGCCAATCTCACATGCAGTGT TCTCCTGTGATAGTCATCTGGTATATGCTAGTTTCTTAGATGCAACTGTCTGTGTATTTAGTGCTATGAATCTCAGATTACGTTGTCGTATCAATCCTTG TACGTATCTTTCCCCTAATGTCAGTTCAAATGTCCACCCACTAGTGATCGCTGCACACCCACAAGAACCAAATCAGTTTGCATTGGGACTATCAGATGGT GGGGTTCATGTCTTTGAGCCTCTTGAATCTGAAGGAAAATGGGGTGTGCCTCCACCTGCTGAGAATGGGTCAGCAAGTAGTGTGCCAGCTACTCCTTCAG TTGGACCATCAGGTTCAGATCAAGCTCAGAGATGA
AA sequence Show only first row Show all	>Potri.001G200500.4 pacid=42792690 polypeptide=Potri.001G200500.4.p locus=Potri.001G200500 ID=Potri.001G200500.4.v4.1 annot-version=v4.1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSMAVEILVKD LKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRSNPDIKTLFV DHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQPAPAPVPAPLAGWMSTPSTVTHSAVSGGGAIGLGAPSIPAALKHPRTPPTNLSVDYPSGD SDHVAKRVRPMGISDEVNLPVNVLPVSFPGHGHGHGHGQAFNAPDDLPKVVARTLNQGSSPMSMDFHPLQLTLLLVGTNVGDIGLWEVGSRERLVLRIFK VWDLNACSMPLQAALAKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGNDEVRQHLEIDAHVGGVNDLAFSTPNKQLCVITCGDDKTIKVWDASTGA KLYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGDSFIVEWNESEGAVKRTYLGFRK QSWGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTTIDADGGLPASPRIRFNKDGTLLAVSANDNGIKILANTDGIRLLRTFENLSFDASRTSESIAKP TVNPISAAAVAAAAAAATSTGLADRSASVVAIAGMNGDARNLGDVKPRLTEESNDKSKIWKLTEINEPSQCRSLRLPENLRVTKISRLIYTNSGNAILAL ASNAIHLLWKWQRSDRNASGKATAGVSPQLWQPSSGILMTNDSTDTNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHP QDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSHVLNMLVSSGADAQLCVWNSDGWEKQKARFLQVPAGRTPTAQSDTRVQFHQDQIHFLV VHETQLAIYETTKLECVKQWVLRESSAPISHAVFSCDSHLVYASFLDATVCVFSAMNLRLRCRINPCTYLSPNVSSNVHPLVIAAHPQEPNQFALGLSDG GVHVFEPLESEGKWGVPPPAENGSASSVPATPSVGPSGSDQAQR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Potri.001G200500 [exp]	0	1
AT5G41620			unknown protein		Potri.003G135000 [exp]	4.69	0.6864
AT5G59070			UDP-Glycosyltransferase superf...		Potri.009G038400 [exp]	6.92	0.6415
AT1G15240			Phox-associated domain;Phox-li...		Potri.001G183100 [exp]	11.74	0.6749
AT4G36630		EMB2754	EMBRYO DEFECTIVE 2754, Vacuola...		Potri.005G123000 [exp]	13.74	0.6070
AT2G46920		POL	poltergeist, Protein phosphata...		Potri.002G185000 [exp]	17.14	0.6462	POL.2
AT3G21620			ERD (early-responsive to dehyd...		Potri.014G156100 [exp]	19.97	0.6130
AT3G49990			unknown protein		Potri.002G028100 [exp]	21.02	0.6085
AT4G27220			NB-ARC domain-containing disea...		Potri.001G425500 [exp]	25.69	0.6582
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Potri.008G192200 [exp]	26.83	0.6474	SNT901
AT1G79570			Protein kinase superfamily pro...		Potri.005G095200 [exp]	28.77	0.5654

Compare expression of checked genes

Potri.001G200500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.