Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17620 169 / 2e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G11890 115 / 8e-31 EMB3135 EMBRYO DEFECTIVE 3135, unknown protein AT5G36970 50 / 5e-07 NHL25 NDR1/HIN1-like 25 (.1) AT3G11650 42 / 0.0002 NHL2 NDR1/HIN1-like 2 (.1) AT4G01110 42 / 0.0003 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G039400 [exp] 353 / 5e-124 AT1G17620 208 / 1e-66 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.018G052500 [exp] 149 / 7e-44 AT5G11890 198 / 3e-62 EMBRYO DEFECTIVE 3135, unknown protein Potri.006G228600 [exp] 147 / 4e-43 AT5G11890 171 / 4e-52 EMBRYO DEFECTIVE 3135, unknown protein Potri.002G180000 [exp] 50 / 3e-07 AT4G01410 232 / 9e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G167300 [exp] 50 / 3e-07 AT2G46300 177 / 5e-55 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.015G148200 [exp] 50 / 6e-07 AT5G36970 227 / 2e-74 NDR1/HIN1-like 25 (.1) Potri.017G154000 [exp] 49 / 8e-07 AT1G54540 242 / 1e-80 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.014G094400 [exp] 46 / 7e-06 AT2G46300 174 / 8e-54 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.012G145500 [exp] 44 / 5e-05 AT5G36970 238 / 2e-78 NDR1/HIN1-like 25 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037638 [exp] 201 / 3e-64 AT1G17620 201 / 4e-64 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10015622 [exp] 200 / 1e-63 AT1G17620 196 / 5e-62 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10003824 [exp] 184 / 2e-57 AT1G17620 191 / 5e-60 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10026428 [exp] 132 / 2e-37 AT5G11890 209 / 7e-67 EMBRYO DEFECTIVE 3135, unknown protein Lus10024987 [exp] 72 / 1e-15 AT5G11890 87 / 5e-21 EMBRYO DEFECTIVE 3135, unknown protein Lus10007364 [exp] 52 / 2e-07 AT1G65690 267 / 6e-90 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10020783 [exp] 50 / 4e-07 AT5G36970 229 / 2e-75 NDR1/HIN1-like 25 (.1) Lus10031888 [exp] 50 / 6e-07 AT1G54540 236 / 2e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF03168 [poplar] [flax] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Potri.001G200700.1 pacid=42789215 polypeptide=Potri.001G200700.1.p locus=Potri.001G200700 ID=Potri.001G200700.1.v4.1 annot-version=v4.1 ATGACAGACAGGGTCCACCCTTCTACTAAACCAGCTACAAATGGCACAACAGCCACCAACCCTTCCTTTCCAGCCACCAAAGCCCAACTCTACGGTGCCA CCCGCCCCGTCTACCGCCCCCAACCCAACAGAAAACGCAGCCGCGGTTGCTTCTGTTCCTGTGTTTTATGGACCGCAGTGGTCATCTTCACTCTCATAGT CCTTGCTGCCATAGCCGGAGCCATTATCTACGTCCTCTACCGACCCCACCGACCCACCTTTGTCGTCTCCGGCCTCAAAATCTCCTCTCTCAACCTTACC TCAACGTCCCATCTCACTACCAACATCGACCTCAACATCACCACTAGAAACCCTAATAAAAAGCTCGTCTATACATACAATCCCATCACTATTTCTGTGA CTACAGAGAAAGATGGTATCCTTGTAGGCAGTGGTCTGTTGCCCTCATTTGTGCATGGCACCAAGAACACAACCTTTTTGAGAGCTGCCATCACAAGCAG TGGCTTACAACTGGATGACAAATCTGGTAGCAAGTTAACGAGTGATTTGAAGAGCAAGGATGGTGTGGCTTTGAAGGTAGAGTTGGAGACTAAAGTAAAA GTCAAGATGGGAGGGTTAAAGACTCCAAAAGCTAGAATTAGGGTCAGTTGTCAAGGGATTAAAGCCACTGTTCCATCTGGGAAACAAGCAACAAAAGCAT CTGTCTCAAATGCAAAGTGCAAGGTTGATTTGAGGATCAAGATCTGGAAGTGGACTTTCTGA
AA sequence Show only first row Show all	>Potri.001G200700.1 pacid=42789215 polypeptide=Potri.001G200700.1.p locus=Potri.001G200700 ID=Potri.001G200700.1.v4.1 annot-version=v4.1 MTDRVHPSTKPATNGTTATNPSFPATKAQLYGATRPVYRPQPNRKRSRGCFCSCVLWTAVVIFTLIVLAAIAGAIIYVLYRPHRPTFVVSGLKISSLNLT STSHLTTNIDLNITTRNPNKKLVYTYNPITISVTTEKDGILVGSGLLPSFVHGTKNTTFLRAAITSSGLQLDDKSGSKLTSDLKSKDGVALKVELETKVK VKMGGLKTPKARIRVSCQGIKATVPSGKQATKASVSNAKCKVDLRIKIWKWTF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17620			Late embryogenesis abundant (L...		Potri.001G200700 [exp]	0	1
AT1G19880			Regulator of chromosome conden...		Potri.005G236000 [exp]	3.87	0.9076
AT3G05950			RmlC-like cupins superfamily p...		Potri.019G026000 [exp]	4.79	0.9346
AT1G70230		AXY4, TBL27	ALTERED XYLOGLUCAN 4, TRICHOME...		Potri.010G095700 [exp]	7.28	0.8718
AT3G05950			RmlC-like cupins superfamily p...		Potri.019G025800 [exp]	7.48	0.9344
AT1G76500	AT-hook	SOB3, AHL29	SUPPRESSOR OF PHYB-4#3, AT-hoo...		Potri.002G003800 [exp]	8.24	0.9294
AT3G05950			RmlC-like cupins superfamily p...		Potri.019G026500 [exp]	9.64	0.9301
AT3G05950			RmlC-like cupins superfamily p...		Potri.019G026700 [exp]	12.44	0.9286
AT1G68400			leucine-rich repeat transmembr...		Potri.010G121700 [exp]	14.24	0.8889
AT1G65870			Disease resistance-responsive ...		Potri.016G060700 [exp]	14.28	0.9271
AT2G30210		LAC3	laccase 3 (.1)		Potri.019G124300 [exp]	14.42	0.9204

Compare expression of checked genes

Potri.001G200700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.