Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ACE.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72970 831 / 0 HTH, EDA17 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT1G12570 560 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT3G56060 530 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT5G51950 529 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT5G51930 482 / 1e-164 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G73050 456 / 4e-155 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G14190 394 / 2e-131 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G14185 393 / 5e-131 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G039000 [exp] 1034 / 0 AT1G72970 808 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.001G111500 [exp] 657 / 0 AT1G12570 773 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.008G009600 [exp] 454 / 4e-154 AT1G73050 785 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.012G135200 [exp] 416 / 1e-140 AT5G51950 525 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.010G168100 [exp] 381 / 6e-126 AT1G14185 654 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G168200 [exp] 379 / 3e-125 AT1G14190 598 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.008G087400 [exp] 372 / 2e-122 AT1G14185 639 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G249501 [exp] 87 / 4e-20 AT1G73050 164 / 7e-49 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003176 [exp] 953 / 0 AT1G72970 822 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10015623 [exp] 886 / 0 AT1G72970 777 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10037640 [exp] 879 / 0 AT1G72970 768 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10024487 [exp] 635 / 0 AT1G12570 709 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10002957 [exp] 619 / 0 AT1G12570 701 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10017827 [exp] 617 / 0 AT1G12570 710 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10027406 [exp] 523 / 1e-180 AT5G51950 694 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10031663 [exp] 523 / 1e-180 AT5G51950 694 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10015012 [exp] 517 / 2e-178 AT5G51950 667 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10038891 [exp] 508 / 2e-174 AT5G51950 668 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00732 [poplar] [flax] GMC_oxred_N GMC oxidoreductase CL0063 [poplar] [flax] PF05199 [poplar] [flax] GMC_oxred_C GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.001G200800.1 pacid=42793125 polypeptide=Potri.001G200800.1.p locus=Potri.001G200800 ID=Potri.001G200800.1.v4.1 annot-version=v4.1 ATGGCTTCTTCTGTTGCCAACCAGCTCTTTCTCTTCTTCTTTCTATGGCTTTATACTCTCTCTTCATCTCAAGCTGGGCACCATTACTCTGAATTTAGGT ATCCGTTCATCAGGAAAGCAAGCTCATTCCCATCATCATCATCATCCTTCTCATCAAGTGGCGGGGGAGACCATGCATATGACTATATAGTTGTTGGAGG TGGCACAGCTGGGTGTCCTTTAGCTGCCACACTCTCTCAGAGGTTTAGTGTCTTATTACTTGAAAGAGGTGGAGTGCCTTTTGCCAATGCAAATGTCTCC TTCTCGAAGAACTTCCACATAGCCCTCGCTGATACTTCATCAACTTCTGCTTCCCAATACTTTATTTCTACTGATGGAGTCCTCAATGCTAGGGCTAGAG TTTTGGGTGGTGGTACTTGCATCAATGCTGGGTTCTACACTAGGGCAAGCAAAAGGTTTATACACAAAGTAGGCTGGGATGCAAAGTTGGTGAATAAGTC GTACCCATGGGTTGAGAAGCAAATCGTTCACAGGCCTAAAGTTGCACCATGGCAGGTTGTTGTAAGGGACAGTCTTTTGGATCTTGGAGTGGCGCCTTTC AATGGATTCACATATGATCACATTTATGGAACCAAGTTTGGTGGTACCATTTTTGACCAATTCGGCCGCCGGCAAACGGCTGCTGAACTACTTGCTTCTG CAGACCCTCGGAAGCTTACTGTGTTGGTGCATGCCACCGTCCAAAAGGTTCTATTTGATATTTCAGGAAAGCGACCAAAAGCAGTAGGAGTCCTGTTCAA AGATGAAAATGGAAACCAGCATCAAGCATTTCTATCAAACAGCCAGAGGAGTGAAATAATATTGTCATGTGGAGCCATTGGCACCCCTCAGATGCTATTG CTCAGTGGTATTGGTCCAAAAGATGAACTCGAGGAGAAGAAAATTTCAGTAGTACTCCACAACAAGTTTGTCGGGAAAGGCATGGCTGATAATCCCATGA ACGCAATTTTTGTTCCCTTTAAAAGACCAGTACAGCAGTCCCTGATACAAACTGTAGGGATTACCAAGATGGGTGTGTACATTGAAGCTAGCAGTGGATT TGGGCAATCCAAGGATAGCATTCAGTGTCACCATGGAATAATGTCTGCAGAGATAGGGCAGTTATCAACCTTACCGCCAAAGCAAAGAACACCAGAGGCC ATCCAAGCTTACATTAAAAGAAAGAAGGACATACCACATGAGGCATTCAAAGGAGGCTTCATTCTTGAAAAGATTGCCAACCCCATTTCCACCGGCCAGC TCAGATTGATCAGCACAAATGTTGAAGACAACCCTTCTGTTACCTTCAACTATTTTAAACATCCACGTGATCTACAGCGCTGTGTTGATGGTATTCGCAT GGCTACAAAGATGGTGCAATCAGAACACTTTAGAAATTTCACTCAATGTGACAAGCAGACCACAGACAAGATTCTTAACATGAGTGTCAGTGCTAATGTT AACCTAGTACCTAAGCATACCAATGACACCAAGTCCCTAGAGCAGTTCTGCAAAGACACCGTAATCACAATTTGGCATTATCATGGTGGGTGTCATGTTG GCAAGGTGGTGAACAGTGATTACAAAGTTCTTGGTGTGAACAGGCTTCGCATTGTGGATGGCTCGGTATTTGATGAATCTCCTGGGACTAATCCTCAAGC CACAGTCATGATGATGGGCAGGTACATGGGACTGAAAATTTTGAGAGACAGACTAGGAAAAGGAGCTGGTGTTTAA
AA sequence Show only first row Show all	>Potri.001G200800.1 pacid=42793125 polypeptide=Potri.001G200800.1.p locus=Potri.001G200800 ID=Potri.001G200800.1.v4.1 annot-version=v4.1 MASSVANQLFLFFFLWLYTLSSSQAGHHYSEFRYPFIRKASSFPSSSSSFSSSGGGDHAYDYIVVGGGTAGCPLAATLSQRFSVLLLERGGVPFANANVS FSKNFHIALADTSSTSASQYFISTDGVLNARARVLGGGTCINAGFYTRASKRFIHKVGWDAKLVNKSYPWVEKQIVHRPKVAPWQVVVRDSLLDLGVAPF NGFTYDHIYGTKFGGTIFDQFGRRQTAAELLASADPRKLTVLVHATVQKVLFDISGKRPKAVGVLFKDENGNQHQAFLSNSQRSEIILSCGAIGTPQMLL LSGIGPKDELEEKKISVVLHNKFVGKGMADNPMNAIFVPFKRPVQQSLIQTVGITKMGVYIEASSGFGQSKDSIQCHHGIMSAEIGQLSTLPPKQRTPEA IQAYIKRKKDIPHEAFKGGFILEKIANPISTGQLRLISTNVEDNPSVTFNYFKHPRDLQRCVDGIRMATKMVQSEHFRNFTQCDKQTTDKILNMSVSANV NLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVGKVVNSDYKVLGVNRLRIVDGSVFDESPGTNPQATVMMMGRYMGLKILRDRLGKGAGV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Potri.001G200800 [exp]	0	1	ACE.2
AT3G55090		ABCG16	ATP-binding cassette G16, ABC-...		Potri.008G047900 [exp]	10.39	0.9559
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G008000 [exp]	12.36	0.9433
AT2G42840		PDF1	protodermal factor 1 (.1)		Potri.002G060800 [exp]	13.03	0.9447
					Potri.010G146200 [exp]	14.00	0.8793
					Potri.001G225804 [exp]	16.49	0.9021
AT3G17070			Peroxidase family protein (.1)		Potri.004G006350 [exp]	16.73	0.9020
AT1G14820			Sec14p-like phosphatidylinosit...		Potri.010G105400 [exp]	17.49	0.9401
AT4G27290			S-locus lectin protein kinase ...		Potri.001G413000 [exp]	20.66	0.9042
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G008100 [exp]	25.92	0.9427
AT4G08910			unknown protein		Potri.014G150900 [exp]	30.00	0.9425

Compare expression of checked genes

Potri.001G200800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.