Plant FIBer expression Database

Potri.001G201100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G15710 469 / 2e-166 prephenate dehydrogenase family protein (.1)
AT5G34930 409 / 4e-139 arogenate dehydrogenase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G062600
[exp]
439 / 5e-150 AT5G34930 858 / 0.0 arogenate dehydrogenase (.1)
Potri.008G074500
[exp]
272 / 5e-90 AT5G34930 295 / 5e-96 arogenate dehydrogenase (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023121
[exp]
558 / 0 AT1G15710 483 / 8e-172 prephenate dehydrogenase family protein (.1)
Lus10011483
[exp]
301 / 8e-103 AT1G15710 253 / 2e-84 prephenate dehydrogenase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF02153 PDH Prephenate dehydrogenase
Representative CDS sequence
>Potri.001G201100.1 pacid=42792355 polypeptide=Potri.001G201100.1.p locus=Potri.001G201100 ID=Potri.001G201100.1.v4.1 annot-version=v4.1
ATGCTCCCATTAATCTCAACAGTACCCCAAACTCTCTCCCCTTCCCTTTCCTTCCATTTCCATCCCTTTCCCTCCTCTTCCACCCCGTCCCTCTCTCTCC
ATATCCCTCTCAAAAATACTCTCCGCATCCGTTCTATCGACGCCGCCCAGCCGTACGACTACGAGTCTCACCTCCGCACCCAACACCTCAAATCCCAATC
CCTCAAAATCGCCATTTTGGGCTTCGGAAACTTCGGCCAGTTCCTCTCCAAAACTCTCTCTCGCCAAGGCCACACTCTCCTCGCCTACTCGCGTTCCGAC
TACACCGATATAGCCAAAAACCTAGGCGTTACTTTCTACAGCAACCCACATGATCTCTTCGAGAGCCACCCAGAAGTTGTAATCCTATGCACTTCCATTC
TTTCCACTGAGAAGGTTCTTCAGACTTTACCATTTCAGAGGCTCAAACGTAGTACCCTTATTGTCGATGTTTTGTCTGTTAAAGAGTTTGCTAAGAATAT
CTTGTTGAAATATTTGCCTGTTGAGTTTGATATCTTGTGTACACACCCCATGTTTGGACCTGAGAGTGGTAAAATTTCTTGGGTTGGTTTGCCTTTTGTT
TATGATAAAGTTAGGATTGGTAATGAGGAGGATAGGATTACTAGAGTTGAGAGATTTCTTGATGTTTTTGCCAAAGAAGGGTGCAGGATGGTTGAAATGA
CCTGTGCAGAGCATGATAGGTATGCGGCAGGGTCGCAGTTTGTTACTCATACTATGGGGAGAGTGTTGGAGAGGTTTGGATTGGATTCGTCGCCGATTAA
TACCAAAGGGTACGACACTTTGTTGGATTTAGTGGAGAATACAGGTGGGGATAGTTTCGAGTTGTATTATGGATTGTTTATGTACAATAAGAATGCTATG
GAGCAGTTGGAGAGACTGGATATGGCATTCGAGGCAATTAAGAAGGAGTTGTTTGGGAAATTGCATCACGTTTATAGGAAACAGTTGTTTGGGAATGCTG
ACGAGGGAGCGGAGGAGAGGCCTAAGGTGCAGAAATTGCTTCACAATGGTGCTCCACCTTCTGATGATGTTGTGAAACAGGAAACATCTTGA
AA sequence
>Potri.001G201100.1 pacid=42792355 polypeptide=Potri.001G201100.1.p locus=Potri.001G201100 ID=Potri.001G201100.1.v4.1 annot-version=v4.1
MLPLISTVPQTLSPSLSFHFHPFPSSSTPSLSLHIPLKNTLRIRSIDAAQPYDYESHLRTQHLKSQSLKIAILGFGNFGQFLSKTLSRQGHTLLAYSRSD
YTDIAKNLGVTFYSNPHDLFESHPEVVILCTSILSTEKVLQTLPFQRLKRSTLIVDVLSVKEFAKNILLKYLPVEFDILCTHPMFGPESGKISWVGLPFV
YDKVRIGNEEDRITRVERFLDVFAKEGCRMVEMTCAEHDRYAAGSQFVTHTMGRVLERFGLDSSPINTKGYDTLLDLVENTGGDSFELYYGLFMYNKNAM
EQLERLDMAFEAIKKELFGKLHHVYRKQLFGNADEGAEERPKVQKLLHNGAPPSDDVVKQETS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G15710 prephenate dehydrogenase famil... Potri.001G201100
[exp]
0 1
AT2G20000 CDC27b, HBT HOBBIT, CDC27 family protein ... Potri.017G065600
[exp]
1.41 0.9597
AT3G06200 P-loop containing nucleoside t... Potri.010G029400
[exp]
2.44 0.9550
AT5G52810 NAD(P)-binding Rossmann-fold s... Potri.004G072500
[exp]
4.47 0.9368
AT3G06200 P-loop containing nucleoside t... Potri.008G200600
[exp]
4.89 0.9474
AT4G12560 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR G... Potri.015G013800
[exp]
6.16 0.9275
AT2G40760 Rhodanese/Cell cycle control p... Potri.019G059400
[exp]
8.94 0.9171
AT2G42080 Chaperone DnaJ-domain superfam... Potri.016G045401
[exp]
9.00 0.9237
AT4G32605 Mitochondrial glycoprotein fam... Potri.008G015600
[exp]
10.95 0.9275
AT2G15690 Tetratricopeptide repeat (TPR)... Potri.003G058300
[exp]
12.12 0.9350
AT5G50320 EAST1, AtELP3, ... HISTONE ACETYLTRANSFERASE OF T... Potri.012G092800
[exp]
14.17 0.8849

Potri.001G201100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.