Plant FIBer expression Database

Potri.001G201300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G201300.2 pacid=42791562 polypeptide=Potri.001G201300.2.p locus=Potri.001G201300 ID=Potri.001G201300.2.v4.1 annot-version=v4.1
ATGGAGAGGGAAAGCCTTTTAAATGGCAACAATAGTGTTGATTTGGTCAAGATTGGCGTGTGCTACATGTTGCAATCTGTGATGGCTGAGACGGCTCTCA
TTGCTCTAACCTCTCGGTTTTTTTTTCTCGTTAAGACATCACCTTTGTTGGATGCTAATATGCTCGAATATTTGGCAGGAACTGATAACAGGTTCCCAAT
GGGCAGATTGAATAGATTGGAAAAGGCTGCTGCTGAAAATATGGATGGCGGTGATGCTGAGGATACTGAAAGTGAAGATGATGATGATGACGAGGATGAT
GAAGATGACGATGACGATGATGGAGAAGATGAGAGTGAAGATGAAGATGATTCTGATGATGAGCCTTTTGGTGATGGAGAAAGTGATGACGACGACGACG
ACGATAGCGATGAATATGATGATGAAGACGATGATGATGGGGATGAAGAAGATGAGGAGGATGAAGAGAGTGAAGAAGAGGATGACAAAGAAATGCAAGC
CCAACCACCTTCCGAAAGGAAGAAGTGA
AA sequence
>Potri.001G201300.2 pacid=42791562 polypeptide=Potri.001G201300.2.p locus=Potri.001G201300 ID=Potri.001G201300.2.v4.1 annot-version=v4.1
MERESLLNGNNSVDLVKIGVCYMLQSVMAETALIALTSRFFFLVKTSPLLDANMLEYLAGTDNRFPMGRLNRLEKAAAENMDGGDAEDTESEDDDDDEDD
EDDDDDDGEDESEDEDDSDDEPFGDGESDDDDDDDSDEYDDEDDDDGDEEDEEDEESEEEDDKEMQAQPPSERKK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G201300
[exp]
0 1
AT3G12650 unknown protein Potri.001G269000
[exp]
7.87 0.8433
AT4G19460 UDP-Glycosyltransferase superf... Potri.001G128300
[exp]
7.93 0.8262
AT5G48380 BIR1 BAK1-interacting receptor-like... Potri.002G240000
[exp]
13.71 0.8312
AT3G26300 CYP71B34 "cytochrome P450, family 71, s... Potri.011G130850
[exp]
20.68 0.8212
Potri.012G009345
[exp]
22.09 0.8181
AT3G52200 LTA3 Dihydrolipoamide acetyltransfe... Potri.008G027400
[exp]
24.24 0.7610 Pt-LTA3.1
AT1G20510 OPCL1 OPC-8:0 CoA ligase1 (.1.2) Potri.005G248500
[exp]
29.44 0.8051 Ptr4CL14
AT3G52040 unknown protein Potri.009G056800
[exp]
31.52 0.8097
AT4G31550 WRKY ATWRKY11, WRKY1... WRKY DNA-binding protein 11 (.... Potri.018G008500
[exp]
31.85 0.8199 Pt-WRKY11.1
AT3G18690 MKS1 MAP kinase substrate 1 (.1) Potri.005G057800
[exp]
34.20 0.8160

Potri.001G201300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.