Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80480 442 / 6e-153 PTAC17 plastid transcriptionally active 17 (.1) AT1G15730 417 / 4e-143 Cobalamin biosynthesis CobW-like protein (.1) AT1G26520 183 / 4e-53 Cobalamin biosynthesis CobW-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G030100 [exp] 551 / 0 AT1G80480 607 / 0.0 plastid transcriptionally active 17 (.1) Potri.001G133500 [exp] 321 / 5e-106 AT1G80480 416 / 2e-143 plastid transcriptionally active 17 (.1) Potri.008G094100 [exp] 178 / 2e-51 AT1G26520 496 / 9e-177 Cobalamin biosynthesis CobW-like protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025665 [exp] 434 / 1e-149 AT1G80480 606 / 0.0 plastid transcriptionally active 17 (.1) Lus10018172 [exp] 432 / 1e-148 AT1G80480 610 / 0.0 plastid transcriptionally active 17 (.1) Lus10004653 [exp] 181 / 3e-52 AT1G26520 540 / 0.0 Cobalamin biosynthesis CobW-like protein (.1) Lus10026658 [exp] 179 / 8e-52 AT1G26520 539 / 0.0 Cobalamin biosynthesis CobW-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF02492 [poplar] [flax] cobW CobW/HypB/UreG, nucleotide-binding domain CL0023 [poplar] [flax] PF07683 [poplar] [flax] CobW_C Cobalamin synthesis protein cobW C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G201400.7 pacid=42787926 polypeptide=Potri.001G201400.7.p locus=Potri.001G201400 ID=Potri.001G201400.7.v4.1 annot-version=v4.1 ATGAGCATAGCTTCGTTATCATCAGTATCAGTGGACATGGCCACTACATTCGTCTCTTTAACTTCTCATCATCCCACCAGAATCTTCCGCTCCACTCTAC TCCCTTTCTTACTCAAACCACAAAAAACCCATCAATCCCTCCTTCTCAAAACTACTCCCTCCCTCCAACGCCGCCGCTTCTCTGTCTCCTCCATCGACAC GACCTCCTCTGCCCCTCAGACCGACGATTCCGGTTTAACCACCAAGATTCCTCCCGATAATCGCATTTCTGCCACTATTATCACCGGTTTTTTGGGCTCT GGCAAGACAACATTGCTCAATCATATTTTGACTGCTGACCATGGGAAGCGCATAGCAGTTATTGAGAATGAGTATGGTGAAGTTGACATTGATGGGTCTC TTGTCGCTGCAAAAACAGCTGGGGCTGAGGACATTATAATGCTGAACAACGGTTGTTTATGCTGTACTGTAAGGGGTGATCTTGTCAGGATGATTGCAGA TTTGGTTAACAAGAAGAAAGGAAAATTTGATCATATTGTAATTGAGACTACGGGGCTGGCAAATCCAGCACCAATCATTCAAACTTTTTACGCTGAAGAC CAGGTTTTTAATGATGTCAAATTGGACGGTGTTGTGACTTTAGTTGATGCTAAACATGCTCATTTGCATCTTGATGAGGTTAAGCCAGAGGGAGTGGTGA ACGAGGCAGTGGAGCAAATTGCTTATGCTGATAGGGTTATAGTAAATAAGACTGATCTTGTTGGTGAGCAAGAAATTGCTTCTTTGGTGCAGCAGATAAG GAACATCAATCGTATGGCTAATTTGAAGTGTACACAATATGGAAAAGTTGACTTGGATTATGTCCTTGGCATTGGAGGCTTTGATTTGGAGAGGATTGAG AGTGCTGTCAATGATGAAGATAGAAAGGAAGATCATGCCAGTCATGATCACAACGACAACCACAGCCAAAATCATGCTCATGATCATGATCATGCTCATG ATCATGATCATGCTCATGATCATGATCACCATCATCATCATGATGAACATGACCACAAGCACGATCATCATGATGGTCACCATTCCCATGACCACACTCA TGATCCTGGTGTTTCTTCTGTCAGCATAGTCTGTGAAGGGAGCCTAGATTTAGAAAAGGCTAACTTCTGGCTTGGTACTTTATTGATGGAACGTAGTGAG GACATATACCGAATGAAAGGTCTATTATCTGTTCAGGGGATGAACGAGAGATTTGTATTCCAGGGTGTTCATGACATATTCGAAGGTTCACCTGATCGGT TATGGGGCCCTGAGGAACCCAGAATGAACAAGATTGTGTTCATAGGGAAGAACTTGGACGCTCAGGAATTAAAGAAAGGCTTTAAAGCCTGTTTACTGTA A
AA sequence Show only first row Show all	>Potri.001G201400.7 pacid=42787926 polypeptide=Potri.001G201400.7.p locus=Potri.001G201400 ID=Potri.001G201400.7.v4.1 annot-version=v4.1 MSIASLSSVSVDMATTFVSLTSHHPTRIFRSTLLPFLLKPQKTHQSLLLKTTPSLQRRRFSVSSIDTTSSAPQTDDSGLTTKIPPDNRISATIITGFLGS GKTTLLNHILTADHGKRIAVIENEYGEVDIDGSLVAAKTAGAEDIIMLNNGCLCCTVRGDLVRMIADLVNKKKGKFDHIVIETTGLANPAPIIQTFYAED QVFNDVKLDGVVTLVDAKHAHLHLDEVKPEGVVNEAVEQIAYADRVIVNKTDLVGEQEIASLVQQIRNINRMANLKCTQYGKVDLDYVLGIGGFDLERIE SAVNDEDRKEDHASHDHNDNHSQNHAHDHDHAHDHDHAHDHDHHHHHDEHDHKHDHHDGHHSHDHTHDPGVSSVSIVCEGSLDLEKANFWLGTLLMERSE DIYRMKGLLSVQGMNERFVFQGVHDIFEGSPDRLWGPEEPRMNKIVFIGKNLDAQELKKGFKACLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80480		PTAC17	plastid transcriptionally acti...		Potri.001G201400 [exp]	0	1
AT4G33480			unknown protein		Potri.007G099900 [exp]	2.44	0.9444
AT2G31530		EMB2289, SCY2	SECY HOMOLOG 2, EMBRYO DEFECTI...		Potri.002G053900 [exp]	5.38	0.9041
AT5G04810			pentatricopeptide (PPR) repeat...		Potri.008G017400 [exp]	8.12	0.9316
AT2G42920			Pentatricopeptide repeat (PPR-...		Potri.005G202600 [exp]	8.36	0.9338
AT2G30320			Pseudouridine synthase family ...		Potri.013G154200 [exp]	19.97	0.9083
					Potri.001G033500 [exp]	21.81	0.9128
AT2G39140		PDE328, SVR1	SUPPRESSOR OF VARIEGATION 1, P...		Potri.008G035500 [exp]	25.00	0.9253
AT4G28590		MRL7	Mesophyll-cell RNAi Library li...		Potri.014G195600 [exp]	26.94	0.8879
AT1G65260		VIPP1, PTAC4	VESICLE-INDUCING PROTEIN IN PL...		Potri.016G099400 [exp]	27.05	0.9262	IM30.2
AT4G29750			CRS1 / YhbY (CRM) domain-conta...		Potri.006G148901 [exp]	27.92	0.9212

Compare expression of checked genes

Potri.001G201400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.