Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52510 585 / 0 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G12830 147 / 3e-40 alpha/beta-Hydrolases superfamily protein (.1) AT1G73480 45 / 7e-05 alpha/beta-Hydrolases superfamily protein (.1) AT4G15955 42 / 0.0002 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT3G05600 42 / 0.0005 alpha/beta-Hydrolases superfamily protein (.1) AT4G15960 42 / 0.0008 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G175700 [exp] 155 / 2e-43 AT4G12830 545 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G081000 [exp] 50 / 2e-06 AT4G02340 455 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G121000 [exp] 49 / 3e-06 AT4G36530 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.014G127200 [exp] 48 / 5e-06 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G039700 [exp] 48 / 6e-06 AT3G51000 203 / 2e-63 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G013500 [exp] 48 / 6e-06 AT3G05600 425 / 2e-150 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G202700 [exp] 48 / 6e-06 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G134800 [exp] 46 / 3e-05 AT4G02340 175 / 2e-52 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G048000 [exp] 45 / 3e-05 AT3G51000 219 / 2e-69 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035875 [exp] 564 / 0 AT1G52510 550 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10025787 [exp] 556 / 0 AT1G52510 543 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10002142 [exp] 148 / 1e-40 AT4G12830 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10008747 [exp] 76 / 2e-14 AT4G12830 326 / 2e-107 alpha/beta-Hydrolases superfamily protein (.1) Lus10004439 [exp] 56 / 2e-08 AT4G02340 384 / 3e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10011204 [exp] 54 / 8e-08 AT4G02340 181 / 8e-55 alpha/beta-Hydrolases superfamily protein (.1) Lus10026141 [exp] 53 / 1e-07 AT4G02340 446 / 6e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10037577 [exp] 53 / 2e-07 AT4G02340 384 / 6e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10020663 [exp] 52 / 3e-07 AT3G05600 416 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10019631 [exp] 50 / 2e-06 AT1G72620 270 / 3e-89 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00561 [poplar] [flax] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Potri.001G201500.3 pacid=42789294 polypeptide=Potri.001G201500.3.p locus=Potri.001G201500 ID=Potri.001G201500.3.v4.1 annot-version=v4.1 ATGGCTACATGGTCTCTGCTCTCTCCTCCTCCTCCTCCTCCTCCTGCTTCTATGCCCACCAGCAACATTAATACAGGCACAAAAACAAGTATGATCTCAA GTAGAAGAAGAAGAAGAGGGACATTAATAATAGCAAATGCCACAAACAGTAGCCAAGACAATGAAAAAGACAAAGATGCACCAGCTTTCAACCCCTTTGG TTTTGTCACTGATAATCCTTCCAGCCGCTCTTCCATTCAGCTCCCTGAGTCTCCTGCTGAGGATGGCAATGTTGGCCAAATGCTCTATAGGATAGAAGAC AAGGGAAAGGAAAATGGCTCCTACGTAAAATCTGGGGAGCTAATATGGTTTGTGAGAGAAACTGGATCTCCTGACAGCCGCCGTGGAACAATTATCTTCT TACATGGGGCGCCAGCACAATCTTACAGTTATCGAGTTGTCATGTCTCAGATGTCAGATGCTGGGTTCCACTGCTTTGCACCTGATTGGATAGGGTTTGG TTTCAGTGACAAGCCACAACCTGGATATGGCTTTGACTACACAGAAAAGGAGTTCCATGAAGCACTTGATAAATTACTTGATGTGCTGGGGGTCAAATCT CCCTTCTTCCTTGTTGTTCAGGGATTTCTTGTAGGTTCATATGGATTGACCTGGGCCCTGAAAAACAAGAGCAAGATATCAAAACTAGCAATTTTGAATA GTCCGGTGACAGTTTCATCTCCCGTTCCTGGACTATTTCAACAGCTAAGGATTCCTCTGTATGGAGAATTTACCTGCCAAAATGCTGTCATGGCTGAGCG CTTTATTGAAGCAGGCAGCCCCTATGTCCTGAAGCTGGAAAAGGCCGACGTTTATCGGTTACCATATTTGGCAAGCAGTGGACCAGGGTTTGCTTTGCTC GAGGCCGCGAGGAAGATCAACTTCAGAGATATTGCAAGCCAAATCGCTGATGGCTTTGCATCTGAAGGATGGGATAAACCAATACTTCTTGCCTGGGGAA TAGCAGACAAGTATCTGCCTCAGGCTGTGGCAGAAGAGTTTCAGAAAGGAAACCCTAATGCTGTGAAACTTAAGTTAATAGAAGGCGCTGGCCATATGCC ACAAGAGGACTGGCCCGAGAAAGTTGTTTATGCTCTGAGAGTATTCTTTTGA
AA sequence Show only first row Show all	>Potri.001G201500.3 pacid=42789294 polypeptide=Potri.001G201500.3.p locus=Potri.001G201500 ID=Potri.001G201500.3.v4.1 annot-version=v4.1 MATWSLLSPPPPPPPASMPTSNINTGTKTSMISSRRRRRGTLIIANATNSSQDNEKDKDAPAFNPFGFVTDNPSSRSSIQLPESPAEDGNVGQMLYRIED KGKENGSYVKSGELIWFVRETGSPDSRRGTIIFLHGAPAQSYSYRVVMSQMSDAGFHCFAPDWIGFGFSDKPQPGYGFDYTEKEFHEALDKLLDVLGVKS PFFLVVQGFLVGSYGLTWALKNKSKISKLAILNSPVTVSSPVPGLFQQLRIPLYGEFTCQNAVMAERFIEAGSPYVLKLEKADVYRLPYLASSGPGFALL EAARKINFRDIASQIADGFASEGWDKPILLAWGIADKYLPQAVAEEFQKGNPNAVKLKLIEGAGHMPQEDWPEKVVYALRVFF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52510			alpha/beta-Hydrolases superfam...		Potri.001G201500 [exp]	0	1
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Potri.003G040800 [exp]	2.00	0.9745
AT4G28080			Tetratricopeptide repeat (TPR)...		Potri.006G180100 [exp]	2.82	0.9648
AT5G55220			trigger factor type chaperone ...		Potri.015G065900 [exp]	3.46	0.9691
AT5G35170			adenylate kinase family protei...		Potri.018G113400 [exp]	5.19	0.9677
AT3G18890		AtTic62	translocon at the inner envelo...		Potri.004G150300 [exp]	5.47	0.9647	Pt-TIC62.1
AT4G22890		PGR5-LIKEA, PGR...	PGR5-LIKE A (.1.2.3.4.5)		Potri.001G113000 [exp]	7.00	0.9600
AT1G25440	CO	COL16	B-box type zinc finger protein...		Potri.015G054600 [exp]	10.39	0.9470
AT1G22700			Tetratricopeptide repeat (TPR)...		Potri.013G114500 [exp]	10.48	0.9557
AT5G64940		ATATH13, ATOSA1	A. THALIANA OXIDATIVE STRESS-R...		Potri.005G083200 [exp]	10.81	0.9564
AT2G02450	NAC	LOV1, ANAC034, ...	LONG VEGETATIVE PHASE 1, Arabi...		Potri.004G230800 [exp]	10.95	0.9505

Compare expression of checked genes

Potri.001G201500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.