Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52520 605 / 0 FAR1_related FRS6 FAR1-related sequence 6 (.1) AT1G80010 547 / 0 FAR1_related FRS8 FAR1-related sequence 8 (.1) AT4G15090 365 / 2e-115 FAR1_related FAR1 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) AT3G22170 341 / 5e-106 FAR1_related FHY3 far-red elongated hypocotyls 3 (.1.2) AT1G76320 332 / 5e-104 FAR1_related FRS4 FAR1-related sequence 4 (.1.2) AT4G38180 326 / 5e-101 FAR1_related FRS5 FAR1-related sequence 5 (.1) AT4G19990 316 / 4e-97 FAR1_related FRS1 FAR1-related sequence 1 (.1.2) AT2G27110 315 / 4e-96 FAR1_related FRS3 FAR1-related sequence 3 (.1.2.3) AT2G32250 295 / 3e-89 FAR1_related FRS2 FAR1-related sequence 2 (.1.2.3.4) AT5G18960 276 / 2e-82 FAR1_related FRS12 FAR1-related sequence 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G256300 [exp] 743 / 0 AT1G52520 672 / 0.0 FAR1-related sequence 6 (.1) Potri.003G031400 [exp] 682 / 0 AT1G52520 931 / 0.0 FAR1-related sequence 6 (.1) Potri.003G031200 [exp] 659 / 0 AT1G80010 726 / 0.0 FAR1-related sequence 8 (.1) Potri.003G031500 [exp] 471 / 5e-163 AT1G52520 220 / 4e-66 FAR1-related sequence 6 (.1) Potri.006G020600 [exp] 389 / 2e-124 AT4G15090 1078 / 0.0 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) Potri.003G207100 [exp] 377 / 1e-120 AT1G76320 947 / 0.0 FAR1-related sequence 4 (.1.2) Potri.003G110300 [exp] 369 / 5e-116 AT4G15090 799 / 0.0 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) Potri.006G020700 [exp] 357 / 5e-112 AT3G22170 1184 / 0.0 far-red elongated hypocotyls 3 (.1.2) Potri.016G018300 [exp] 353 / 7e-111 AT3G22170 1139 / 0.0 far-red elongated hypocotyls 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031825 [exp] 285 / 6e-88 AT1G76320 656 / 0.0 FAR1-related sequence 4 (.1.2) Lus10026854 [exp] 49 / 5e-06 AT3G59470 121 / 1e-32 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) Lus10020226 [exp] 44 / 0.0002 AT3G59470 120 / 7e-33 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03101 [poplar] [flax] FAR1 FAR1 DNA-binding domain CL0274 [poplar] [flax] PF04434 [poplar] [flax] SWIM SWIM zinc finger CL0219 [poplar] [flax] RNase_H PF10551 [poplar] [flax] MULE MULE transposase domain
Representative CDS sequence Show only first row Show all	>Potri.001G201600.6 pacid=42793058 polypeptide=Potri.001G201600.6.p locus=Potri.001G201600 ID=Potri.001G201600.6.v4.1 annot-version=v4.1 ATGGAAGAAGAGTGTCTTAACACAGAATCGGTGGGAAATGATGATGCTGCTGATGAATGTGGGATTGAAGGAGATTGTGCGATGACGGAATATGTCAATC AGACTGGTGTGATTGAGAACCCCCTGCCTCCTTCCGTTGGCATGGAGTTTGAGTCCTATGAGGACGTGTATTACTTTTACAATTGCTATGCCAAGCAACA GGGATATGGGATTCGAGTAAGTAATACATGGTATAGGAAGAGTAAAGAAAGATACAGAGGAAAACTTAGCTGCAGTAGTGCAGGCTTCAAGAAGAAAAGT GAAGCAAACCGACCAAGACCTGAAACAAGAACAGGCTGTCCAGCGATGGTGAAGTTCAGGTTGATGGAAAACAAGAGGTGGAAAATTATTGAAGTCGAAC TTGAGCACAATCACTTAATTACCCCAGGAAGCGGTAAATTCTATAAATCTCATAAAATTATTGGTCCTGGGACCAAAAGGACATTGCAGTTGGATGGTCC TGAAGAAGTACAGAAAATTAAGCTGTTTCGCACTGTGATTGTTGATGCTGAGGGCAATGGAGGTGTGGATACTGATGGAGGACAGTTTGGGAATGATGTT CTCCTGCCCAGTCAATTGAAGCTCAAAGAAGGAGATGCCCAAGCTGTTCAAAGTTTTTTTTTCCGCTTGCAATTGATGGATCCCAACTTCTTTTACGTGG TAGAACTTAATGAGAAAGGATACATGAGGAATTTGTTTTGGACTGATGCAAGGTCTAGGGCTGCGTATGGTTATTTTTGTGATGTAATTGCAATTGACAC TATGTGCTTGACATACAAATTTGAAGTACCACTGGTTGCATTTATTGGAGTAAACCATCATGGACAACCTATCCTATTGGGATGTGGTATGCTTGCCGAT GAAACAACCGAATCATACACGTGGCTGTTGAGGGCATGGCTTACATGTATGTTAGGACGTCCTCCACAAGCTATCATCACTGATCACCATAAGACCTTGC AAACTGCTGTCGCTGATGTTTTCCCGAGAGCTTCTCATTGTTTTTATTTGTCACGTATCGTGCAAAGAATTCCAGAGACTCTGGGAGAATTGTTTGATTT TGAAGCAATTAAAGTATCATTGAGTAAAGTAGTTTACTGCTTTCTCAGGCCTGAGGAATTTGAAGCAGCTTGGGAAGAGATGACACAGCATCATGGAATC AGGGATCATAAATGGATCCAAACATTATATGAGGATAGGAAAAGGTGGGTTCCAGCCTATTTGAAAGAGACATTTCTGGCAGGAATGTTACCGCTCCAGC AAAATGAAACTGCAGCATCATTTTTTGAAGGGTATCTGGATAGACATACATCTCTCAAAGAATTTATGGACAACTATGATCAAGCTTTACAGGCGAATCG TCAGCTTGAATCCTTGGCCGATATGGATTCGAGGAATTCAAGTTTTATGCTAAAATCAAGGTGTTTCTTTGAGCTGCAACTCTCAAAGTTGTACACAAAT GAAATCCAGAGGAGATTTGAAAGGGAGGTGGAGGGTATGTACTCCTGTTTTAGCACAAGACAAGCTTATGTTGATGGACAGGTGATGACATATTTAGTAA AAGAAGAAGTTGAAGTTGAAGGAAGTAAGCGGGAAACTAGAGATTTTGAGGTCATGTACAATGCATCCGAAATGGATGTTCTTTGTGTTTGTGGATTGTT CAATTTTAGTGGGTTCTTGTGTAGGCATGCATTGAGTGTCCTTAACCAAAATGGCTTGGAGGAGATCCCGCCTCAATACATCCTCACACGGTGGAGAAAA GATATGAAGCGGTCTTATGTTCTTGATCACAGCTGCCGCGGTATTGACATCAATAACCCAATTCACAGGTATGATCATTTGTACAAATGCATTGTTCGGG TTGTAGAGGAAGGGAGGAAATCACAAGACTGTTCCAAGGCTACGCAGCAAGCTTTGGCCGACATGTTGAGCAAGCTTCATCTTGTAGAGGACCGGCCACC GGCCATGTAA
AA sequence Show only first row Show all	>Potri.001G201600.6 pacid=42793058 polypeptide=Potri.001G201600.6.p locus=Potri.001G201600 ID=Potri.001G201600.6.v4.1 annot-version=v4.1 MEEECLNTESVGNDDAADECGIEGDCAMTEYVNQTGVIENPLPPSVGMEFESYEDVYYFYNCYAKQQGYGIRVSNTWYRKSKERYRGKLSCSSAGFKKKS EANRPRPETRTGCPAMVKFRLMENKRWKIIEVELEHNHLITPGSGKFYKSHKIIGPGTKRTLQLDGPEEVQKIKLFRTVIVDAEGNGGVDTDGGQFGNDV LLPSQLKLKEGDAQAVQSFFFRLQLMDPNFFYVVELNEKGYMRNLFWTDARSRAAYGYFCDVIAIDTMCLTYKFEVPLVAFIGVNHHGQPILLGCGMLAD ETTESYTWLLRAWLTCMLGRPPQAIITDHHKTLQTAVADVFPRASHCFYLSRIVQRIPETLGELFDFEAIKVSLSKVVYCFLRPEEFEAAWEEMTQHHGI RDHKWIQTLYEDRKRWVPAYLKETFLAGMLPLQQNETAASFFEGYLDRHTSLKEFMDNYDQALQANRQLESLADMDSRNSSFMLKSRCFFELQLSKLYTN EIQRRFEREVEGMYSCFSTRQAYVDGQVMTYLVKEEVEVEGSKRETRDFEVMYNASEMDVLCVCGLFNFSGFLCRHALSVLNQNGLEEIPPQYILTRWRK DMKRSYVLDHSCRGIDINNPIHRYDHLYKCIVRVVEEGRKSQDCSKATQQALADMLSKLHLVEDRPPAM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52520	FAR1_related	FRS6	FAR1-related sequence 6 (.1)		Potri.001G201600 [exp]	0	1
AT3G09360			Cyclin/Brf1-like TBP-binding p...		Potri.001G246100 [exp]	14.45	0.7740
AT5G06810			Mitochondrial transcription te...		Potri.016G048400 [exp]	17.43	0.7570
AT3G42170			BED zinc finger ;hAT family di...		Potri.004G126740 [exp]	22.18	0.7687
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Potri.008G011800 [exp]	25.98	0.7573
AT5G06810			Mitochondrial transcription te...		Potri.016G048300 [exp]	30.57	0.7337
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Potri.001G170200 [exp]	32.86	0.7548
AT1G21740			Protein of unknown function (D...		Potri.005G070200 [exp]	34.35	0.7414
AT2G41890			curculin-like (mannose-binding...		Potri.001G006100 [exp]	39.24	0.6963
AT1G77250			RING/FYVE/PHD-type zinc finger...		Potri.002G076900 [exp]	39.59	0.7340
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.013G149800 [exp]	40.38	0.7441

Compare expression of checked genes

Potri.001G201600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.