Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15920 590 / 0 Phox (PX) domain-containing protein (.1) AT4G32160 482 / 2e-160 Phox (PX) domain-containing protein (.1) AT2G25350 401 / 4e-130 Phox (PX) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G026000 [exp] 627 / 0 AT4G32160 736 / 0.0 Phox (PX) domain-containing protein (.1) Potri.006G256000 [exp] 583 / 0 AT4G32160 758 / 0.0 Phox (PX) domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002925 [exp] 533 / 1e-180 AT4G32160 709 / 0.0 Phox (PX) domain-containing protein (.1) Lus10023125 [exp] 464 / 1e-153 AT3G15920 365 / 2e-115 Phox (PX) domain-containing protein (.1) Lus10001495 [exp] 242 / 9e-75 AT4G32160 323 / 9e-107 Phox (PX) domain-containing protein (.1) Lus10001496 [exp] 247 / 5e-74 AT4G32160 294 / 1e-92 Phox (PX) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00787 [poplar] [flax] PX PX domain
Representative CDS sequence Show only first row Show all	>Potri.001G201900.1 pacid=42789827 polypeptide=Potri.001G201900.1.p locus=Potri.001G201900 ID=Potri.001G201900.1.v4.1 annot-version=v4.1 ATGGATATGTACACATACGACCTCTCTCTCTTGGATTTCTCCGATCCCTTCTTCGATCCAATCTCCACTTCTCACCTTCACCACCTTCTTCACCGTTCGT CGTCGTCATCATCATCATCATCAAAGTCTTCAACAGTAATCGATCGCCATGATAAGCCAAAGAGCCCTCCAAGGCACCGTCATGATGGAACGTCCCCTCT CCCACTTGGAATGGATTGGTGCCTCCCTCCTCGTAAATGGGATGGACGGAATTCCGTTTGGCCTCATGATCCACATACCGGATGGAGCTATTGTGTTACC ATTCCTTCTTGGATTCTTGTGCCCAAGTCAAGAGGTTCAGATCCTGTCGCGTTTTACAGAGTTCAAGTTGGTGTACTGTCACCCGAAGGGCTCACCACCA CCAGAGGGATATTGCGAAGATTTAGTGATTTTTTAAATCTATTTTATGAGCTTAAAAAGGCATTTCCTCTTAAAACTCTTCCTCCAGCTCCTCCAAAGAC GATTTTGAGAATGAAGAGCAGGACATCTGTGGAAGAGCGAAGATGTTCTCTGGAGGATTGGATGGAAAAACTATTATCGGACATTGATGTATCCAGAAGT GCTCCAGTAGGAACATTTCTTGAGCTTGAGGCTGCAGCAAGGTCATCTTTTGATGATGCAAATCAGCAAGGGGAAGATGTTGATTCATCTGTTATTGGCA TGGTTCCATCATTTCTTCTGCAAACCAGCTCGGATGGTTCTGTTCTTGCTGGTAGTACATCAGTTGCATCATATCATGATTATGATTCTCCTGGTGAGAT GTCAGGGTTTGCAACTCCAAGGATTGAAAGAGATATCAATGATGATCTTGGCATGGAAGCTTCAATGTCTGATCAAAACATAAGCGATCCCACTGAAACA CCTGTTAAACACAGTAGGTTTAGCAAGAGCTCTGTTCTGGAGAACCTAGAAAGGGTTAAAAGTATCACAGGCAGAGATAAACATGCTGATAGTACATCTA AAGCTAAATCTTTTCTTGGTGATGAAACGGTACCTTTGCCCGAACAAGAGTATCTGAGACTGGATGGTCATATCCGACAACTGTCTACAGAGAGTATTGA GAGTGACATCAGTTCTGTGAGAGCTAGTGAAATATCAAATTTGGGGATGGGTAATTTATTTGGTGATAATTCCATTGATTGTCCTGAAGGAACTGAGAGT TCTAAAATCATTGATGCTTCTGTAAGCTCTGATTTACAGTTATCAAGGGATGTACTAGTTGCTCTTCCATCAGATGAGCGCCATAAATTGAACAGGGTTC TTAATACTTTACAGCAAAGACTGGCTACTGCAAAAACAGATGTGGAAGATCTTATAGCAAGATTAAATCAAGAGATTGCTGTGAGGCAATTCTTGACAAC AAAGGTTAAAGATTTGGAAGTGGATCTTGAGACTACTAGAAACAATTGTAAAGAAAACATGCAACAAGCTGTTTTGATTGAAAGGGAAAGATTTACTCAA ACGCAGTGGGACGTGGAGGAACTCCGTAGGCAGTGTTTGGAGTTGGAGCTAAAACTGAAACATGAACAGGATGAAAAGGCATGTTCTGAGTCTGCTAAAA TTTCAATACTGCATGACAACAAAATGTTGCTGCAGCAGTTGGATGTTGCTAGAAAAGATTTTGAAGACTTAAATAAAGATCATGAAGAGTTACAGGTGAA GTCAAAAGCAGATGTAAAGCTCCTTGTTAAAGAGGTCAAATCTCTTCGAAATTCTCAGAGAGAACTAAAGCAGGAGCTTAGCCGATTGATGAAAGAGAAA TTAGAAGTAGAGAGAGCAGTTCATAAGGAAAAGCAAATAACCGAGAATGTAATTGCTGCTAATGCCAAGCTGTTGCATGAGTGTGAAATTCTTCACAACA GGCTTGAAGAATGCAGTGTGAACTTCCTTATCGAGGAGGAAGATAAATTAATTGTGGATACTTCATCACCATCTGATGCCATTGATCTCTTGACTACATC TGACAATCGAATTGGCCTCCTTCTTGCAGAGGCACAGCTCCTGGCGCAGGATTTGGAAAATTCTGTGGCAAGATTGGATGAAACTCACAACACAAATGAC AGTGATAGAACGGAGAATGAGTTGAGGAAGATGCTGACAGAAACTTTCATTGACAATGCCAGATTGAGGATGCAGGTCAATTCCATAATCCGATGTGCTC TAAACATACATTTGAAGTCTGATAAAGATGATGAGGATGAGGAAGCTCCTTTGAGAAAAACTGTCTTAAGCAAATTCTTAGAAAGATAA
AA sequence Show only first row Show all	>Potri.001G201900.1 pacid=42789827 polypeptide=Potri.001G201900.1.p locus=Potri.001G201900 ID=Potri.001G201900.1.v4.1 annot-version=v4.1 MDMYTYDLSLLDFSDPFFDPISTSHLHHLLHRSSSSSSSSSKSSTVIDRHDKPKSPPRHRHDGTSPLPLGMDWCLPPRKWDGRNSVWPHDPHTGWSYCVT IPSWILVPKSRGSDPVAFYRVQVGVLSPEGLTTTRGILRRFSDFLNLFYELKKAFPLKTLPPAPPKTILRMKSRTSVEERRCSLEDWMEKLLSDIDVSRS APVGTFLELEAAARSSFDDANQQGEDVDSSVIGMVPSFLLQTSSDGSVLAGSTSVASYHDYDSPGEMSGFATPRIERDINDDLGMEASMSDQNISDPTET PVKHSRFSKSSVLENLERVKSITGRDKHADSTSKAKSFLGDETVPLPEQEYLRLDGHIRQLSTESIESDISSVRASEISNLGMGNLFGDNSIDCPEGTES SKIIDASVSSDLQLSRDVLVALPSDERHKLNRVLNTLQQRLATAKTDVEDLIARLNQEIAVRQFLTTKVKDLEVDLETTRNNCKENMQQAVLIERERFTQ TQWDVEELRRQCLELELKLKHEQDEKACSESAKISILHDNKMLLQQLDVARKDFEDLNKDHEELQVKSKADVKLLVKEVKSLRNSQRELKQELSRLMKEK LEVERAVHKEKQITENVIAANAKLLHECEILHNRLEECSVNFLIEEEDKLIVDTSSPSDAIDLLTTSDNRIGLLLAEAQLLAQDLENSVARLDETHNTND SDRTENELRKMLTETFIDNARLRMQVNSIIRCALNIHLKSDKDDEDEEAPLRKTVLSKFLER

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15920			Phox (PX) domain-containing pr...		Potri.001G201900 [exp]	0	1
AT3G53390			Transducin/WD40 repeat-like su...		Potri.016G088800 [exp]	1.00	0.8028
AT3G10550		MTM1, AtMTM1	Arabidopsis thaliana myotubula...		Potri.010G233600 [exp]	3.00	0.7780
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Potri.003G100600 [exp]	4.00	0.7272
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Potri.001G343500 [exp]	7.74	0.7017
AT5G49430			WD40/YVTN repeat-like-containi...		Potri.008G106800 [exp]	10.24	0.7529
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Potri.009G073800 [exp]	16.12	0.7192
AT4G28990			RNA-binding protein-related (....		Potri.018G083100 [exp]	16.97	0.7627
AT5G11850			Protein kinase superfamily pro...		Potri.018G053800 [exp]	18.33	0.7164
AT3G26100			Regulator of chromosome conden...		Potri.012G018600 [exp]	19.36	0.7075
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Potri.012G089700 [exp]	19.74	0.6848

Compare expression of checked genes

Potri.001G201900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.