Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80080 598 / 0 AtRLP17, TMM TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) AT1G68780 196 / 3e-57 RNI-like superfamily protein (.1) AT3G25670 197 / 4e-57 Leucine-rich repeat (LRR) family protein (.1) AT4G28560 191 / 2e-55 RIC7 ROP-interactive CRIB motif-containing protein 7 (.1) AT1G13230 189 / 1e-54 Leucine-rich repeat (LRR) family protein (.1) AT2G42800 159 / 4e-43 AtRLP29 receptor like protein 29 (.1) AT5G49660 147 / 2e-37 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G35710 141 / 2e-35 Protein kinase family protein with leucine-rich repeat domain (.1) AT5G46330 140 / 3e-35 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G20140 137 / 4e-34 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G114700 [exp] 194 / 8e-56 AT1G68780 387 / 2e-131 RNI-like superfamily protein (.1) Potri.008G211800 [exp] 182 / 4e-52 AT2G42800 474 / 7e-166 receptor like protein 29 (.1) Potri.005G227600 [exp] 146 / 2e-38 AT4G28560 444 / 2e-153 ROP-interactive CRIB motif-containing protein 7 (.1) Potri.002G008100 [exp] 144 / 1e-36 AT4G08850 565 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.002G008175 [exp] 144 / 1e-36 AT4G08850 566 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G060400 [exp] 144 / 2e-36 AT4G08850 728 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.001G075000 [exp] 143 / 4e-36 AT4G20140 1371 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.003G184100 [exp] 142 / 7e-36 AT2G24130 710 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.019G060168 [exp] 141 / 2e-35 AT4G08850 735 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026208 [exp] 555 / 0 AT1G80080 500 / 2e-175 TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) Lus10042458 [exp] 538 / 0 AT1G80080 467 / 3e-163 TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) Lus10034261 [exp] 194 / 1e-56 AT1G13230 460 / 6e-161 Leucine-rich repeat (LRR) family protein (.1) Lus10034384 [exp] 183 / 3e-52 AT1G13230 455 / 5e-159 Leucine-rich repeat (LRR) family protein (.1) Lus10038948 [exp] 181 / 1e-51 AT1G68780 404 / 2e-138 RNI-like superfamily protein (.1) Lus10027239 [exp] 181 / 2e-51 AT3G25670 402 / 6e-138 Leucine-rich repeat (LRR) family protein (.1) Lus10019036 [exp] 154 / 1e-39 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019035 [exp] 153 / 1e-39 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10003624 [exp] 149 / 3e-39 AT4G28560 441 / 2e-152 ROP-interactive CRIB motif-containing protein 7 (.1) Lus10005017 [exp] 145 / 8e-37 AT4G08850 562 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.001G202100.1 pacid=42789274 polypeptide=Potri.001G202100.1.p locus=Potri.001G202100 ID=Potri.001G202100.1.v4.1 annot-version=v4.1 ATGCTAACCTTTTTGTATCCACGAGCACAGACACTAACACTACTTCTTATGTCTCTTCTATTACCACTCGCCAAGCCTTTCACGGTCATCGTGTCGGATT CTAGCAACCAATCCGCCCTCGTGGACGGGCCGCAATCTGGGTTCACGATGAACAAGAATGGAGCTCGGACCGATGCTCGTGAGCAAGAAGCGGTCTATGA CATCATGCGAGCCACTGGCAACGACTGGGCAACCGATATCCCTGATGTTTGTCGTGGCCGGTGGCACGGTATCGAGTGCATGCCGGACAAGGACAATGTG TACCATGTTGTTTCATTGTCCTTCGGCACCTTGTCCGATGACACTGCTTTCCCCACATGCGACCCGGCAAGGTCCTACATCTCAGAGTCTATCATGAAGC TTCCCCACCTCAAAACTTTGTTTTTTTACCGTTGTTTTAGCGACAACCCACAGCCTATCCCTTCATTTTTGGGGCAACTGAGCCCAACTTTGCAAACCTT GGTGCTCAGGGAAAACGGGCATGTAGGCCTTGTTCCTGCTGAATTAGGAAATCTTACACGTCTGAAAGTTCTTGATCTCCACAAAAACAATCTTAACGGT TCAATTCCTGTTTCATTGGGCCGGCTGGCCGGCCTAAAATCGTTGGATTTGAGTGGGAATAAACTGACCGGTTCAATTTTCAGTTTAAGTTTCCCGGTTT TAAATGTTTTGGACCTGAGCCAGAATATGCTCACGGGTTCAATTCCATCCTCCCTTGGTTTTTGTCACTCTCTAATCAAAATTGATTTTAGTCGAAATCG TCTAAGTGGTTCCATTCCAGAGTCAATTGGTAGCCTCAAAGAGCTTATTCTAATGGATTTGAGCTATAATCGGCTATCAAAGCCGCTTCCAACATCCATT AGAAGCTTGAATTCTCTCCAAGCATTGATTCTCAAAGGAAATCCAATGGGGTCTACAACCCTTGCTAGTAAGGAGTTTGATGGTATGAAGAGTCTAATGG TTTTAATTCTATCAAACACAAATTTGCACGGTCCAATCCCTGAGTCACTAGGCCGGTTAACAAACCTTCGGGTCATCCATCTTGATGGGAACCACTTAAA TGGTTCAATTCCTATAAACTTCAAGGACTTGAAAAACCTTGGTGAATTGAGACTCAATGACAATCAACTTACTGGGCCGGTTCCATTTGGAAGAGAAATG GTGTGGAAGATGAGAAGGAAGCTTAAACTTTACAATAACACAGGATTGTGTTATGATGCTAATAGTGGTTTTGAAGATGGTCTGGATTCTACATTCGATT CGGGTATTGGTTTATGCAACACACCTGAACCCGGTTCAGCAAGGACAGTGCAACATCTTTCTGCAATTGACGGGGAGACTATGCCAAGTACAACTAATAA ATCCTCAGCAGCACTTCATAAAGCTTCAGTTTTTGTTAGGTTGCTTCAACAAACAATAGCTATTGTGTCTACTTTAATTTTCATTTCAACGTGA
AA sequence Show only first row Show all	>Potri.001G202100.1 pacid=42789274 polypeptide=Potri.001G202100.1.p locus=Potri.001G202100 ID=Potri.001G202100.1.v4.1 annot-version=v4.1 MLTFLYPRAQTLTLLLMSLLLPLAKPFTVIVSDSSNQSALVDGPQSGFTMNKNGARTDAREQEAVYDIMRATGNDWATDIPDVCRGRWHGIECMPDKDNV YHVVSLSFGTLSDDTAFPTCDPARSYISESIMKLPHLKTLFFYRCFSDNPQPIPSFLGQLSPTLQTLVLRENGHVGLVPAELGNLTRLKVLDLHKNNLNG SIPVSLGRLAGLKSLDLSGNKLTGSIFSLSFPVLNVLDLSQNMLTGSIPSSLGFCHSLIKIDFSRNRLSGSIPESIGSLKELILMDLSYNRLSKPLPTSI RSLNSLQALILKGNPMGSTTLASKEFDGMKSLMVLILSNTNLHGPIPESLGRLTNLRVIHLDGNHLNGSIPINFKDLKNLGELRLNDNQLTGPVPFGREM VWKMRRKLKLYNNTGLCYDANSGFEDGLDSTFDSGIGLCNTPEPGSARTVQHLSAIDGETMPSTTNKSSAALHKASVFVRLLQQTIAIVSTLIFIST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80080		AtRLP17, TMM	TOO MANY MOUTHS, Receptor Like...		Potri.001G202100 [exp]	0	1
AT5G52560		ATUSP	UDP-sugar pyrophosphorylase (....		Potri.005G183200 [exp]	4.12	0.7116
AT3G26410		TRM11, AtTRM11	tRNA modification 11, methyltr...		Potri.003G022701 [exp]	8.48	0.6894
AT4G13590			Uncharacterized protein family...		Potri.003G174600 [exp]	24.00	0.7110
					Potri.004G046401 [exp]	28.98	0.6837
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G050060 [exp]	31.22	0.6513
					Potri.004G103350 [exp]	36.52	0.6714
AT3G45880			2-oxoglutarate (2OG) and Fe(II...		Potri.001G233200 [exp]	56.76	0.6791
AT3G22200		HER1, GABA-T, P...	POLLEN-PISTIL INCOMPATIBILITY ...		Potri.006G020900 [exp]	65.26	0.6533	POP2.2
AT5G60230		ATSEN2, SEN2	splicing endonuclease 2 (.1.2)		Potri.009G131500 [exp]	192.60	0.6258	Pt-SEN1.2
AT3G59780			Rhodanese/Cell cycle control p...		Potri.019G098001 [exp]	224.10	0.6198

Compare expression of checked genes

Potri.001G202100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.