Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52540 427 / 5e-150 Protein kinase superfamily protein (.1) AT3G15890 426 / 2e-149 Protein kinase superfamily protein (.1) AT3G24540 280 / 6e-90 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT3G24550 278 / 5e-88 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G70460 279 / 8e-88 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G68690 275 / 3e-86 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT3G09010 265 / 8e-86 Protein kinase superfamily protein (.1) AT1G60800 272 / 1e-85 NIK3 NSP-interacting kinase 3 (.1) AT3G20530 263 / 7e-85 Protein kinase superfamily protein (.1) AT4G33430 268 / 3e-84 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G032100 [exp] 666 / 0 AT1G52540 451 / 3e-159 Protein kinase superfamily protein (.1) Potri.006G173800 [exp] 412 / 3e-143 AT1G52540 344 / 4e-117 Protein kinase superfamily protein (.1) Potri.015G134500 [exp] 400 / 5e-139 AT1G52540 335 / 2e-113 Protein kinase superfamily protein (.1) Potri.012G132200 [exp] 398 / 1e-138 AT1G52540 335 / 3e-114 Protein kinase superfamily protein (.1) Potri.001G203601 [exp] 286 / 2e-97 AT3G15890 129 / 8e-37 Protein kinase superfamily protein (.1) Potri.011G049600 [exp] 275 / 1e-89 AT3G09010 427 / 2e-149 Protein kinase superfamily protein (.1) Potri.017G110400 [exp] 273 / 3e-85 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.008G111600 [exp] 273 / 4e-85 AT1G68690 622 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Potri.018G081300 [exp] 271 / 6e-85 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011490 [exp] 569 / 0 AT3G15890 466 / 2e-165 Protein kinase superfamily protein (.1) Lus10023130 [exp] 545 / 0 AT1G52540 473 / 3e-168 Protein kinase superfamily protein (.1) Lus10019988 [exp] 411 / 7e-143 AT1G52540 348 / 2e-118 Protein kinase superfamily protein (.1) Lus10006985 [exp] 407 / 1e-141 AT1G52540 348 / 8e-119 Protein kinase superfamily protein (.1) Lus10001323 [exp] 407 / 3e-141 AT1G52540 353 / 3e-120 Protein kinase superfamily protein (.1) Lus10031673 [exp] 400 / 7e-139 AT1G52540 338 / 1e-114 Protein kinase superfamily protein (.1) Lus10043050 [exp] 275 / 1e-89 AT3G20530 561 / 0.0 Protein kinase superfamily protein (.1) Lus10019621 [exp] 274 / 3e-89 AT3G20530 536 / 0.0 Protein kinase superfamily protein (.1) Lus10040050 [exp] 274 / 4e-89 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Lus10011148 [exp] 272 / 2e-88 AT3G20530 560 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.001G204000.1 pacid=42789474 polypeptide=Potri.001G204000.1.p locus=Potri.001G204000 ID=Potri.001G204000.1.v4.1 annot-version=v4.1 ATGGCCTTTGCTTCTATGCTTTGTTGTGTAAAGAATTCGGATCGTAAAGAGCGAGGAAAGAAGCAGCTGACATGGCGAATCTTCTCCTTGAAGGAATTAC ACTCAGCCACCAACAACTTCAATTATGATAACAAGCTGGGAGAAGGGGGATTTGGCAGTGTTTATTGGGGTCAGCTTTGGGATGGATCACAGATTGCAGT TAAAAGGTTAAAGGTCTGGAGCAACAAAGGAGATATGGAATTTTCTGTTGAGGTGGAGATATTAGCACGTGTTAGGCACAAGAATCTGCTGAGCCTACGC GGTTATTGTGCTGAAGGGCAAGAGCGCCTGATTGTATATGACTACATGCCAAATTTGAGCTTGCTCTCTCACCTTCACGGGCAGCACTCTGCAGAATGTC TTCTTGACTGGAAGAGACGGATGAATATTGCGATAGGATCTGCTGCGGGAATCACTTATCTTCACCACCATGCAACCCCCCATATCATCCACAGAGACAT CAAAGCTAGCAATGTGTTGCTAGATTCAGATTTCCAGGCACAGGTTGCTGATTTTGGATTTGCAAAGCTTATCCCTGATGGTGCAACACATGTAACAACA AGAGTTAAAGGTACACTTGGCTACCTTGCCCCTGAATATGCTATGCTTGGGAAAGCATCAGAGAGCTGTGATGTATACAGCTTTGGCATTCTCTTGCTAG AGCTTGCTACTGGCAAGAGACCACTTGAGAAGATGAGTCCCACAGTTAAAAGAACAATTACAGATTGGGCTCTGCCATTGGCTTGTGAGAGGAAGTTCAG TGAACTGGCAGATCCCAAGCTGAATGGGAAGTATGACGAGGAAGAGTTGAGAAGGGTTGTCTTTGTCTCTCTTGTTTGTACTCACACTCAGCCGGAGAGA AGACCCACAATGCTTGATGTGGTAGAGCTGCTGAAGGGAGAGTCCAAGGAGAAATTATCCGAACTAGAAAATGATGAAATGTTCAAGGCCCCTCAGGCCG CTGATTTCGATGATGAAGAAATATCGATTGCCGAAAACAGCTCAGACTTCATCTCGGAGGAGAAGGACGTGAACAGGGAAGTGAAAGAGATTGTACAGGA AAATACTCATAATAGCTGA
AA sequence Show only first row Show all	>Potri.001G204000.1 pacid=42789474 polypeptide=Potri.001G204000.1.p locus=Potri.001G204000 ID=Potri.001G204000.1.v4.1 annot-version=v4.1 MAFASMLCCVKNSDRKERGKKQLTWRIFSLKELHSATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSNKGDMEFSVEVEILARVRHKNLLSLR GYCAEGQERLIVYDYMPNLSLLSHLHGQHSAECLLDWKRRMNIAIGSAAGITYLHHHATPHIIHRDIKASNVLLDSDFQAQVADFGFAKLIPDGATHVTT RVKGTLGYLAPEYAMLGKASESCDVYSFGILLLELATGKRPLEKMSPTVKRTITDWALPLACERKFSELADPKLNGKYDEEELRRVVFVSLVCTHTQPER RPTMLDVVELLKGESKEKLSELENDEMFKAPQAADFDDEEISIAENSSDFISEEKDVNREVKEIVQENTHNS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52540			Protein kinase superfamily pro...		Potri.001G204000 [exp]	0	1
AT2G32170			S-adenosyl-L-methionine-depend...		Potri.016G021900 [exp]	4.12	0.8924
AT3G12130	C3HZnF		KH domain-containing protein /...		Potri.006G191900 [exp]	4.58	0.8878
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Potri.004G062300 [exp]	6.32	0.8632
AT1G78290		SRK2C, SNRK2-8,...	SNF1-RELATED PROTEIN KINASE 2C...		Potri.005G162500 [exp]	7.87	0.8902
AT4G14570		AtAARE, AARE	acylamino acid-releasing enzym...		Potri.008G160400 [exp]	8.48	0.8845
AT3G54500			unknown protein		Potri.003G200600 [exp]	10.53	0.8377
AT1G77850	ARF	ARF17	auxin response factor 17 (.1)		Potri.002G089900 [exp]	11.40	0.8564
AT1G65770		AMR1	ascorbic acid mannose pathway ...		Potri.005G105400 [exp]	13.26	0.8701
AT3G55270		MKP1, ATMKP1	ARABIDOPSIS MITOGEN-ACTIVATED ...		Potri.010G210900 [exp]	13.74	0.8656
AT3G56630		CYP94D2	"cytochrome P450, family 94, s...		Potri.016G031700 [exp]	14.28	0.8714	Pt-CYP94.6

Compare expression of checked genes

Potri.001G204000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.