Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15820 334 / 1e-115 ROD1 REDUCED OLEATE DESATURATION 1, phosphatidic acid phosphatase-related / PAP2-related (.1) AT3G15830 333 / 2e-115 phosphatidic acid phosphatase-related / PAP2-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G032200 [exp] 417 / 2e-148 AT3G15820 337 / 1e-116 REDUCED OLEATE DESATURATION 1, phosphatidic acid phosphatase-related / PAP2-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025747 [exp] 315 / 3e-108 AT3G15820 325 / 3e-112 REDUCED OLEATE DESATURATION 1, phosphatidic acid phosphatase-related / PAP2-related (.1) Lus10035915 [exp] 311 / 1e-106 AT3G15820 326 / 2e-112 REDUCED OLEATE DESATURATION 1, phosphatidic acid phosphatase-related / PAP2-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0525 [poplar] [flax] pap2 PF14360 [poplar] [flax] PAP2_C PAP2 superfamily C-terminal
Representative CDS sequence Show only first row Show all	>Potri.001G204100.1 pacid=42789785 polypeptide=Potri.001G204100.1.p locus=Potri.001G204100 ID=Potri.001G204100.1.v4.1 annot-version=v4.1 ATGAAAACAACCACCACCGCAACTATCACCGCCACGATTCCCACCCCTTATAAGCGTAAACAGATCAACGTTGACGGCGGCTTCAACATGGAGGAGGAGG AGGAAAAGAAAATTGTTGGCATTATGACCGATGGAGTTAGTAACGGTTTCTATGCTGTTGACCCGTTCTTTTTGAAATGGACGGTGCATGATATGGTCAA TGTGGCTAAGCATCATTGGCTTCCGTGCTTTTTTGGATTTGGGTTGTTGTTTTTCATGGCCGTGGAGTACACGCTCCCCATGGTGCCAGCATCATCGCCT CCGTTTGACTTGGGATTTGTTGCCACGCACCTCCTTCACGGATTGCTGTACTCGTGGCCGGAGCTCAATACTTTACTCGCTGCTCTTAATACGGTATTTG TGGGTATGCAAACAACATATATCCTATGGACGTGGCTAGTTGAAGGCAGACCTAGAGCAACAATCTCTGCGTTATTTATGTTCACTTGCCGTGGGATTCT GGGTTACTCCACTCAGCTTCCATTGCCAGAGGAATTTTTGGGGTCAGGGGCGGACTTTCCAGTGGGTAATGTATCGTTTTTCTTGTTTTTCTCAGGCCAT GTTGCAGGGTCTGTGATTGCATCATTGGATATGAGAAGAATGCAGAGGTGGGAATTGGCTTGGACATTTGATGTGCTTAATGTTCTGCAAGTTATTAGGC TTCTTGGTACTAGGGGTCACTATACCATAGATTTAGTTGTTGGTGTTGGTGCTGGTATTCTCTTTGATTCACTTGCTGGAAAATATCAAGAGTGCATACG AAGGAAATCAATTGCTGCTAAAGAGGCTTTCTTTAGTTAG
AA sequence Show only first row Show all	>Potri.001G204100.1 pacid=42789785 polypeptide=Potri.001G204100.1.p locus=Potri.001G204100 ID=Potri.001G204100.1.v4.1 annot-version=v4.1 MKTTTTATITATIPTPYKRKQINVDGGFNMEEEEEKKIVGIMTDGVSNGFYAVDPFFLKWTVHDMVNVAKHHWLPCFFGFGLLFFMAVEYTLPMVPASSP PFDLGFVATHLLHGLLYSWPELNTLLAALNTVFVGMQTTYILWTWLVEGRPRATISALFMFTCRGILGYSTQLPLPEEFLGSGADFPVGNVSFFLFFSGH VAGSVIASLDMRRMQRWELAWTFDVLNVLQVIRLLGTRGHYTIDLVVGVGAGILFDSLAGKYQECIRRKSIAAKEAFFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15820		ROD1	REDUCED OLEATE DESATURATION 1,...		Potri.001G204100 [exp]	0	1
AT2G42570		TBL39	TRICHOME BIREFRINGENCE-LIKE 39...		Potri.013G118500 [exp]	1.41	0.9394
AT3G55430			O-Glycosyl hydrolases family 1...		Potri.008G056000 [exp]	1.41	0.9374	Pt-GNS2.1
AT1G32090			early-responsive to dehydratio...		Potri.001G133800 [exp]	2.44	0.9265
AT3G55780			Glycosyl hydrolase superfamily...		Potri.010G193700 [exp]	3.46	0.9032
AT3G21770			Peroxidase superfamily protein...		Potri.014G135580 [exp]	6.24	0.9028
AT3G18200			nodulin MtN21 /EamA-like trans...		Potri.015G042900 [exp]	8.00	0.9068
AT1G14390			Leucine-rich repeat protein ki...		Potri.001G147700 [exp]	8.36	0.9107
AT5G01890			Leucine-rich receptor-like pro...		Potri.006G108600 [exp]	8.94	0.9213
AT4G24780			Pectin lyase-like superfamily ...		Potri.012G091500 [exp]	11.22	0.9019
AT1G80370		CYCA2;4	Cyclin A2;4 (.1)		Potri.003G058200 [exp]	11.40	0.9055

Compare expression of checked genes

Potri.001G204100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.