Plant FIBer expression Database

Potri.001G204300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G15840 364 / 4e-128 PIFI post-illumination chlorophyll fluorescence increase (.1.2.3.4.5)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038253
[exp]
387 / 9e-137 AT3G15840 380 / 4e-134 post-illumination chlorophyll fluorescence increase (.1.2.3.4.5)
Lus10025847
[exp]
386 / 4e-136 AT3G15840 381 / 2e-134 post-illumination chlorophyll fluorescence increase (.1.2.3.4.5)
PFAM info
Representative CDS sequence
>Potri.001G204300.2 pacid=42788742 polypeptide=Potri.001G204300.2.p locus=Potri.001G204300 ID=Potri.001G204300.2.v4.1 annot-version=v4.1
ATGGCAGCAACGGGTGCATCTATCTTTCAAATTTCGACGCAACCTCGTGTCTTCACGAGGCCAATTACTACTGCTAATATTAATAATGCTAATCCATCCG
TCTCGAACACTCTTGCTAGTTCTTTCATCGGTTCTTCTTTGCAACGGAGCACTACTAAGAAGAAAAGAGCAGTTAAGATTGGTAGGAAAGTGATCGCTGC
AGCTGCTGTTACTGTTGCCACTCCTTCAAGGGAGGAAGTTAAGGAATATGCACGTCCTACATGGGCCATGTTTGAACTTGGAAGTGCCCCCGTCTTCTGG
AAAACCATGAACGGCCTTCCTCCATCTTCTGGGGAAAACCTAAAGCTTTTCTACAATCCAGCTGCAAACAAGCTTGTTCCAAACGAAGAATTTGGGATTG
CTTTTAATGGAGGTTTTAATCAGCCCATCATGTGTGGTGGTGAGCCAAGGGCAATGCTGAGGAAAGTTAGAGGGAAGGCTGATCCGCCATTTTACACCAT
CCAGATATGCGTTCCTAAGCATGCTGTGAACTTGATATTCTCGTTCACAAATGGAGTTGACTGGGATGGTCCTTACAGGCTGCAGTTTCAAGTTCACAAT
GGCTGGCGAAACAAGCCCATCGAATTCTTCAACGAGGGCCTGGCAGAAGAGTTGAGTAAAGAAGGTGCGTGCGAAAAAGCAATTTTTCCGGATACAGATA
TCATTGTTACGAGATGTGCTATGATCGGCAACTTATCCATTGAAGGGGGTGATCGTTGCGATCTTGATCTAGTCTCAGGATGCATGGATCCTAGCTCACA
TTTATATAACCCCCTTGCCAATGTGGATGATGGAACCTGCCCAATTGAGATGGAAGATTAG
AA sequence
>Potri.001G204300.2 pacid=42788742 polypeptide=Potri.001G204300.2.p locus=Potri.001G204300 ID=Potri.001G204300.2.v4.1 annot-version=v4.1
MAATGASIFQISTQPRVFTRPITTANINNANPSVSNTLASSFIGSSLQRSTTKKKRAVKIGRKVIAAAAVTVATPSREEVKEYARPTWAMFELGSAPVFW
KTMNGLPPSSGENLKLFYNPAANKLVPNEEFGIAFNGGFNQPIMCGGEPRAMLRKVRGKADPPFYTIQICVPKHAVNLIFSFTNGVDWDGPYRLQFQVHN
GWRNKPIEFFNEGLAEELSKEGACEKAIFPDTDIIVTRCAMIGNLSIEGGDRCDLDLVSGCMDPSSHLYNPLANVDDGTCPIEMED

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G15840 PIFI post-illumination chlorophyll ... Potri.001G204300
[exp]
0 1
AT5G23240 DNAJ heat shock N-terminal dom... Potri.001G347600
[exp]
1.00 0.9867
AT1G51110 Plastid-lipid associated prote... Potri.001G011700
[exp]
2.00 0.9841
AT1G35420 alpha/beta-Hydrolases superfam... Potri.019G079000
[exp]
2.82 0.9804
AT1G76760 ATY1, TRX-Y1 thioredoxin Y1 (.1) Potri.005G193400
[exp]
3.00 0.9819 PtrTrxy1
AT3G62410 CP12-2 CP12 DOMAIN-CONTAINING PROTEIN... Potri.014G120700
[exp]
5.00 0.9770
AT3G46660 UGT76E12 UDP-glucosyl transferase 76E12... Potri.001G245900
[exp]
6.00 0.9721
AT1G02560 NCLPP5, NCLPP1,... NUCLEAR CLPP 5, NUCLEAR-ENCODE... Potri.014G119700
[exp]
7.74 0.9769
AT4G13670 PTAC5 plastid transcriptionally acti... Potri.001G049900
[exp]
8.48 0.9736
AT1G10500 ATCPISCA chloroplast-localized ISCA-lik... Potri.005G085400
[exp]
9.16 0.9706
Potri.011G080900
[exp]
9.16 0.9704

Potri.001G204300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.