Plant FIBer expression Database

Potri.001G204350 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
ATMG00760 52 / 4e-08 ATMG00760.1, ORF109B unknown protein
ATMG00750 48 / 1e-06 ATMG00750.1, ORF119 GAG/POL/ENV polyprotein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G404951
[exp]
174 / 1e-51 ND /
Potri.001G371850
[exp]
48 / 1e-06 ND /
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0129 Peptidase_AA PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease
Representative CDS sequence
>Potri.001G204350.1 pacid=42791431 polypeptide=Potri.001G204350.1.p locus=Potri.001G204350 ID=Potri.001G204350.1.v4.1 annot-version=v4.1
ATGGAAAAGCAAGAGGCAATTAACACTCAACTTGCTCAAAGCATGACAGATTTTAAAGATACTCTTGCAAAGTTCACATCTGCTCTCAGTTTCCAAGAGA
AAGGTAAGTTTCCATCTCAACCACAACAAAATCCCAAGGGGCAGTACCATGCAAATGCAAGTAGTTCTGGAAGCCAACACATGGATCAAGCCAAATCAGT
CATCATTCTTCGCAGTGGTAAGATTATTGAAAAACCCAGTCTTGAACCTTGTGAGAATGATGATGAGTCAATCTCTGAAGGTAAGGAAGGGGTTGAATCT
GATCATTGCAAAGAAAAGACTGATTCTCCGCCAGCACTTCCATTTCTTCATGCCATGACCAAACAAAGGAAAGTTAATCACAACTCTGAAATCTTTGAAA
CTTTCAAACAGGTAAGGATCAATATACCTTTGTTGGATGCTATTAAACAGGTTCCTTCTTATGCTAAATTTTTGAAAGATCTGTGCACTGTGAAGAGAAA
ATTGAATGTGAAAAAGAAAGCCTTTTTAGCCGAACAAGTAAGTGCCATTCTTCAGAACAATAATGCATTGAAATATAAAGACCCTGGTTGTCCTACAATT
TCTTGCTTTATTGGAGAACATAAAATTGAAAGAGCCTTACTTGATCTTGGAGCTAGTGTGAATTTACTTCCATATTCAGTTTTTCAAAGTCTCAATCTAG
GTGAGTTAAAACCAACTTCTGTAACTCTTTTACTTGCCGATAGATCTGTAAAAGTGCCTAGAGGAATAGTTGAAGATGTGTTAGTACAAGTCGATAAGTT
CATTTATCCTGTGGATTTTATTGTCTTGGACACAAAACCTGTTGAAGCATGTAATTCATTTCCTGTTATTTTAGGACGTCCGTTTCTTGCAACTTCTAAT
GCATTGATTAATTGTAGGAATGGACTGATGAAGCTATCATTTGGGAACATGACATTGGAGATGAATATTTTCAATATTTGCAAGCAACCTGGAGATGATA
ATGATTTACAAGAAGTAGATTCTATTGAAGAATTAGTTTATGATCAACTTGAATCTACTTTGAGTAAAATTGAATTGGATGAATCTGAAGATTTGCAAAT
GATTTATTCTCAGGAAGAAATCACGGATGAAAAAGACACCGAAAATGTTGATGCGGATCTTTTGTCAAAAGTAACAACAGATTCGACATCCGACATTACA
CCAATCGATGATTACTTTCCTGACAAATCCTTACTTTCTCTGAGTTCAATGCCTTGGTTTGCTAAAAATATCAATTTTCTTGCTACAGGTGATTTGCCAA
CTCATTGGAGTACCGAAGACAAAGGTAAGTTTTTGAACGAAGTGAAGAAATTTTATTGGGATGACCCCTACTTATTCGAATATTGTCCTGATCAAATATT
TCGAAGATGCATTCCTGACAATGAGGTAAGTAATGTCATTAAACTTTGTCATTCTGAAGCATGTGGGAGTCATTTCTCGTCAAAAAAGACAGCTGCAAAA
ATTTTACAAAATGGATTTTATTGGCCCACCATGTTCAAGGACACACATGCATTCTGCAAAACTTGTGAAAATTGTCAAAAAGTTGATTCTGGTCAAAAAG
TTTTGCTTTATAATTCTCAACTCCATTTATGTCCTGGAAAGCTAAGATCAAGATGGAGCGGTCCATTTATTGAGAAACATGTGTATCCTTATGGGGCCTT
TGATATTGAGAATCCAAAGAATGACAATGTTTCTAAGGGAAATGGACATCGTTTGAAACCTTACTTTGATAATTTTCCTAGTGAAAATGAATCCATTGGT
TTGAATGATCCTATAGATAAAGGTTGA
AA sequence
>Potri.001G204350.1 pacid=42791431 polypeptide=Potri.001G204350.1.p locus=Potri.001G204350 ID=Potri.001G204350.1.v4.1 annot-version=v4.1
MEKQEAINTQLAQSMTDFKDTLAKFTSALSFQEKGKFPSQPQQNPKGQYHANASSSGSQHMDQAKSVIILRSGKIIEKPSLEPCENDDESISEGKEGVES
DHCKEKTDSPPALPFLHAMTKQRKVNHNSEIFETFKQVRINIPLLDAIKQVPSYAKFLKDLCTVKRKLNVKKKAFLAEQVSAILQNNNALKYKDPGCPTI
SCFIGEHKIERALLDLGASVNLLPYSVFQSLNLGELKPTSVTLLLADRSVKVPRGIVEDVLVQVDKFIYPVDFIVLDTKPVEACNSFPVILGRPFLATSN
ALINCRNGLMKLSFGNMTLEMNIFNICKQPGDDNDLQEVDSIEELVYDQLESTLSKIELDESEDLQMIYSQEEITDEKDTENVDADLLSKVTTDSTSDIT
PIDDYFPDKSLLSLSSMPWFAKNINFLATGDLPTHWSTEDKGKFLNEVKKFYWDDPYLFEYCPDQIFRRCIPDNEVSNVIKLCHSEACGSHFSSKKTAAK
ILQNGFYWPTMFKDTHAFCKTCENCQKVDSGQKVLLYNSQLHLCPGKLRSRWSGPFIEKHVYPYGAFDIENPKNDNVSKGNGHRLKPYFDNFPSENESIG
LNDPIDKG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
ATMG00750 ATMG00750.1, OR... GAG/POL/ENV polyprotein (.1) Potri.001G204350
[exp]
0 1
Potri.004G088000
[exp]
18.81 0.6791
AT5G67320 HOS15 high expression of osmotically... Potri.005G144400
[exp]
21.21 0.6716
AT2G46040 ARID ARID/BRIGHT DNA-binding domain... Potri.014G086700
[exp]
24.95 0.6476
AT1G21200 Trihelix sequence-specific DNA binding ... Potri.005G191700
[exp]
38.20 0.6170
AT4G03430 EMB2770, STA1 STABILIZED 1, EMBRYO DEFECTIVE... Potri.013G135300
[exp]
38.53 0.6457
AT3G14180 Trihelix ASIL2 Arabidopsis 6B-interacting pr... Potri.003G200000
[exp]
40.47 0.6483
AT2G06040 unknown protein Potri.006G142200
[exp]
42.60 0.6401
AT4G11560 bromo-adjacent homology (BAH) ... Potri.001G104300
[exp]
49.44 0.6345
AT1G54490 ATXRN4, XRN4, E... ETHYLENE INSENSITIVE 5, ACC IN... Potri.013G070200
[exp]
69.19 0.6226
AT1G21200 Trihelix sequence-specific DNA binding ... Potri.001G019200
[exp]
73.32 0.6010

Potri.001G204350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.