Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15760 202 / 2e-66 Sterile alpha motif (SAM) domain-containing protein (.1) AT1G80520 188 / 4e-61 Sterile alpha motif (SAM) domain-containing protein (.1) AT2G12462 101 / 3e-26 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G012100 [exp] 351 / 3e-125 AT1G15760 204 / 3e-67 Sterile alpha motif (SAM) domain-containing protein (.1) Potri.006G061400 [exp] 137 / 5e-40 AT2G12462 180 / 3e-56 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024059 [exp] 165 / 3e-51 AT1G80520 151 / 5e-46 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10041687 [exp] 163 / 1e-50 AT1G15760 158 / 1e-48 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10001679 [exp] 112 / 1e-30 AT2G12462 136 / 5e-39 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0003 [poplar] [flax] SAM PF07647 [poplar] [flax] SAM_2 SAM domain (Sterile alpha motif)
Representative CDS sequence Show only first row Show all	>Potri.001G204600.1 pacid=42787741 polypeptide=Potri.001G204600.1.p locus=Potri.001G204600 ID=Potri.001G204600.1.v4.1 annot-version=v4.1 ATGGATTGGTTCTCATGGCTATCAAAAACTGGCCTTGAGCCTTCTCTTGTGTATGAATACGGCCTTGCTTTTGCTCACAATGAGCTTGAAGAAGAAGATA TACCTTACTTTAATCATGAGTTTCTTCAAAGCATGGGGATATCAATAGCCAAACATAGGCTTGAGATCCTCAAGCTTGCAAGAAAGGAGAAAGGAAAGAG CCCTCGTGCCATGGCAAGGGTTCTTGTTGCAATCAAGAGGACAAAGAGGTGTCTAGCTAAGTACATAAGGACATGGATTCGCAGCGAGGAGTCAGCTCTT GTTCTTCTTCAAAGGCCTGGTTATGGTACCAGATGGAGAGGAACTATGTTGAAGAGGAACAAGAAGTTGATGATGTCTAAACAAGGTAGGTTGTTGCTTA CAAATGGTAGCTTTTCAAACACCCCTATGATTTCTGCTGGCCCAACCCTTGATAGTTTTTCAAGCCCTGTGATTTATGATCTCAACAAAGAGAAGTTGGA TCAGGGTGGTGATGAGGGGTACTGGACAACTGGTGTTGAAGAGATCAGGTGGGATACCATGTTCCAGAATCTGAAACCAACATGA
AA sequence Show only first row Show all	>Potri.001G204600.1 pacid=42787741 polypeptide=Potri.001G204600.1.p locus=Potri.001G204600 ID=Potri.001G204600.1.v4.1 annot-version=v4.1 MDWFSWLSKTGLEPSLVYEYGLAFAHNELEEEDIPYFNHEFLQSMGISIAKHRLEILKLARKEKGKSPRAMARVLVAIKRTKRCLAKYIRTWIRSEESAL VLLQRPGYGTRWRGTMLKRNKKLMMSKQGRLLLTNGSFSNTPMISAGPTLDSFSSPVIYDLNKEKLDQGGDEGYWTTGVEEIRWDTMFQNLKPT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15760			Sterile alpha motif (SAM) doma...		Potri.001G204600 [exp]	0	1
AT5G08350			GRAM domain-containing protein...		Potri.005G088700 [exp]	3.46	0.8669
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Potri.007G018100 [exp]	3.87	0.9023	Pt-BGAL3.1
AT1G19360		RRA3	reduced residual arabinose 3, ...		Potri.009G113300 [exp]	12.00	0.8823
AT5G25530			DNAJ heat shock family protein...		Potri.006G246700 [exp]	16.73	0.8305
AT5G06470			Glutaredoxin family protein (....		Potri.006G201300 [exp]	17.60	0.8749
AT1G80690			PPPDE putative thiol peptidase...		Potri.001G047800 [exp]	19.67	0.8763
AT3G25130			unknown protein		Potri.002G246400 [exp]	24.41	0.8756
AT2G18040		PIN1AT	"peptidylprolyl cis/trans isom...		Potri.007G013400 [exp]	26.49	0.8450
AT1G78300		14-3-3OMEGA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Potri.005G162400 [exp]	32.40	0.8519	CHI.2
AT3G10960		ATAZG1	AZA-guanine resistant1 (.1)		Potri.016G133800 [exp]	32.72	0.8068

Compare expression of checked genes

Potri.001G204600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.