Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15780 576 / 0 unknown protein AT2G10440 260 / 1e-72 unknown protein AT1G15770 159 / 6e-43 unknown protein AT1G15790 100 / 5e-24 unknown protein AT1G15772 50 / 2e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G012400 [exp] 811 / 0 AT1G15780 557 / 2e-175 unknown protein Potri.003G028089 [exp] 325 / 9e-95 AT1G15780 223 / 5e-60 unknown protein Potri.001G033400 [exp] 301 / 8e-88 AT1G15780 238 / 3e-66 unknown protein Potri.003G014000 [exp] 290 / 6e-87 AT1G15780 157 / 2e-41 unknown protein Potri.003G013000 [exp] 252 / 1e-75 AT1G15780 171 / 5e-48 unknown protein Potri.016G028200 [exp] 263 / 1e-72 AT1G15780 252 / 4e-69 unknown protein Potri.006G031200 [exp] 250 / 2e-68 AT1G15780 242 / 1e-65 unknown protein Potri.003G025500 [exp] 232 / 7e-68 AT1G15780 128 / 1e-32 unknown protein Potri.003G028401 [exp] 220 / 5e-64 AT1G15780 162 / 2e-44 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015323 [exp] 697 / 0 AT1G15780 587 / 0.0 unknown protein Lus10025452 [exp] 687 / 0 AT1G15780 248 / 3e-68 unknown protein Lus10025450 [exp] 555 / 0 AT1G15780 454 / 8e-149 unknown protein Lus10015322 [exp] 172 / 8e-44 AT1G15780 164 / 1e-41 unknown protein Lus10025451 [exp] 138 / 8e-35 AT1G15780 137 / 6e-35 unknown protein Lus10026119 [exp] 132 / 2e-34 AT1G15780 128 / 3e-34 unknown protein Lus10025448 [exp] 96 / 1e-22 AT1G15780 80 / 9e-18 unknown protein Lus10015321 [exp] 84 / 5e-17 AT1G15780 78 / 5e-16 unknown protein Lus10012027 [exp] 84 / 6e-16 AT4G12020 102 / 2e-24 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3) Lus10023978 [exp] 72 / 2e-14 AT1G15780 71 / 4e-15 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G204900.12 pacid=42791891 polypeptide=Potri.001G204900.12.p locus=Potri.001G204900 ID=Potri.001G204900.12.v4.1 annot-version=v4.1 ATGGATGCCAATAATTGGAGGCCTACTGCCCCCGGTGGAGAACCTGTCATGGACACGGGTGATTGGAGAACTCAATTGCAGCCGGACGCACGCCAAAGAA TAGTCAACAAAATCATGGAGACATTAAAAAGACATCTTCCATTTTCTGGTCAAGAGGGATTACAAGAACTCAAGAAAATAGCCGTACGGTTTGAGGAAAA GATTTATACTGCTGCAACAAGTCAGTCTGATTATCTGCGTAAAATATCTCTGAAGATGCTTGCAATGGAGAACAAGTCTCAAAGTACCATACCCAATTCT TTGCCACCCAACTCCACTGGCAGTGGTAACAAACCCCTGGATCCAGGAGGATCTCACAGTATGCAGTCTCAAGTTCACAATCAAGGGCCATCACTCACTA TCCCATTGCCTGCTAATCAATCTCAAGAACGCCAGCAATTGTTGTCACAGAACATGCAGACTGGTATGGCATCTAGTGGAGTTCAAAGTTCTTCTGGTTT AACGTCAGCATTGCCTCCCATCTCCAGTTTAACCCAGACTGTCCCCAACTCTGTTGGCCAGAATCCTAACATGCAGAGTATCTCTGGTGTTTCACAGAAC CCAGTGGGGAATCCAATGGGACAAGGGGTGCCCTCCAATATGCTTGCCAATTCTCAGAGACAAGGTAGGCAACTAGTTGTTCCACAGCAACAACAGCAGC CCCAAAATCCTCAGCAGTATTTTTACCAGCAGCAGTTACAACAACAGCTTTTGAAGCAGAAGCTTCAACAGGGAAATCCCCAGCACTCACTTGTGCAATC TCACGTCCAGCAGCAGCAACAGCAGCAGCAAAACCTATTACAGTCAAATCAGTTGCAATCTTCTCAGCAGTCTGGTGTGCAAACACCATCTGTTATGCAG CCTTCAATAATGCAAACGGCTCCTCTCTCTTGTCTTCAACAGAATCAGCCATCTTCTGTTCAACAGTCAACACAACCCATGCTTCAGCAACATCCACAAC CAGTCCTCAGGCAGCAGCAACAACCTCAACAGACTGCTGGTATTCATCAGCAGCAGAGGTTGCTAGGCCAGCAGAATAACCTTCCAAATCTGCAGCAGCA GCAATTAATGGTTCAACAAAATAACCTATCAAGCATGCATCAGCAACAGCTGGGCTCTCAAAGTAATGTCTCCAGTTTACAGCAGCAGCAGCTGCTTGGA GCTCAGTCTGGTAACTCAAGCATGCAAACTAATCAGCACCCTGTACACATGCTACAACAGTCCAAGGTTACGCTGCAGCAACAAGCACAACAAAGTGCAG GTACTTTGTTACCTAATCAAGGGCAGCAGTCACAACCACAGCTGCCACAGCAGCAATTGATGTCACAGATCCAATCACAGCCAGTGCAGCTGCAACAGCA ATCAAATCCATTACAACATGATCTGCAACAAAGATTTCAAGCATCAGGTTCCTTGCTTCAACAGCAGAATGTGACTGATCAGCAAAAGCAGTTATATCAA TCTCAAAGAGCCCTTCCAGAAACGTCCCCAACATCCCTAGATTCTACAACACAGACTGGACATGTGAATGTCAATGATTGGCAAGAGGAGATCTACCAAA AGATCAAAGTCATGAAGGAGATGTATTTCCCTGAAATAAATGAAATATACCAGAGAATTGCTGCCAAGTTACCGCAGCATGACTCTCATCCGCAACAACC AAAGTCAGAACAGCTTGACAAGCTAAAGGCACTTAAGACCATGTTGGAGCGCCTGATAATGTTCTTACAAGTTCCGAAAAACAACATCAAGCTTAATTTC AAAGAGAAGTTGGGTTACTATGAGAATCAGATTTTAAATTTTCTAAACACAAGCAGACCCAGAAAGCCTGTTCCTAATCTTCAGCAAGGACAGCTTCCCC AGCTTCATATGCAACCTATGCAGCGACCCCAATCTCAAGTTCCTCAATTGCAGTCCCATGAAAATCAACTCAACCCCCAGTTGCAATCAATGAATTTGCA AGGTTCTGTACCAACAATGCAGCAGAACAATGTGCCAAGCTTGCCGCATAATTCTCTTTCTTCTTTATCTGGGGTTTCTACATCACAACCAAACAAGATG AATCCAATGCAATCAGCTTCCAATTTAGATTCTGGACAAGGAAATTCACTGAGCTCATTGCAGCAGGCACCTGTAGGATCTGTACAACAGAATCCTGTGA GCAGTTCCCAACCTACCAATTTTAACACATTGTCAACACAAAGTGGGGTGAGTATGCTGCAGTCGAATATTCCTCTTCAGTTGAATTCCAATATGATTCA ACAGCAGCATCTAAAACAGCAGATGCTACAAACACAACAGCTTAAACAACAGTTCCAACAGCGTCAGCCGCAGCAGCAACAGCGTCAGACGCAGCAGCAA CAGCATTTAATGCAGAAGCAACAGATGCTGCTGCAGCAGCAGCAGCAGCAGTTACACCAGCAAGCCAAGCAGCAGTTGCCTGCACAGATGCAGACACAAC AAATTCCACAGCCGCATCAGATGAATGATGTAAATGAGATGAAGTTGAGACAGGGGATTGGAATCAAGCCAGCAGTCTTCCAACAACATCTCTCGACAGG TCAACGCACTGCTTTCCCTCATCAACAAATGAAACCAGGATCCTCATTTCCTATTTCTTCACCACAAATGCTCCAGCATGCTTCCCCCCAATTACAACAA CATTCTTCTCCTCAGATTGACCAGCAAAATCTACTGCCTTCTCTAACTAAAACTGGAACACCTTTGCAATCTGCAAACTCGCCTTTTGTTGTCCCATCTC CTTCAACTCCTTTAGCTCCATCCCCTGTGCCAGGAGATTCTGAGAAACCCATTTCTGGTATCTCCTCAAATATTGTACACCAACCAACTGTTGCACAAGC AACGGCTCCATCCCTTGCAATTGGCACTCCTGGGATATCTGCCTCGCCTTTGCTTGCAGAGTTTACCAGTCCTGATGGTGCTCATGGTGGTGCTTTGACA ACTGTTTCTGGCAAGTCGAATGTTATGGAGCAACCACTTGAACGCATGATTAAAGCGGTGAAATCTCTTTCTCCTAAAGCACTTAGTGCATCTGTCAGTG ACATTGGCTCTGTTGTCAGTATGATTGACAGAATTGCTGGCTCGGCACCCGGTAATGGGTCTAGAGCTGCAGTTGGTGAGGATCTGGTAGCGATGACAAA ATGTCGCCTTCAGGCAAGAAATTTCTTCACCCAAGATGGGATGACTGGATCGAAGAAAATGAGGCGCCATACAAGTGCCATGCCCTTGAATGTTGCATCA TCAGCTGGCAGTGTAAGCGACAGTTTTAAGCAGTTTACTGGTCCAGAGACATCTGATTTGGAGTCGACTGTAACGTCAAGTGTCAAGAGGCCTAAAATTG AGCTCTTCTTGCAGGCTAATCATGCCCTTTTGGAAGAGATAAGGGAAATAAATCAGCGACTTTTAGACACAGTGGTTGATATTAGTGATGAAGATGTTGA CTCAACTGCAGCAGCAGCTGCTGCTGAAGGGGGTGGAGGAACCTTTGTCAAATGCTCATTTATCGCTGTGGCTCTGAGTCCAAACTTGAAAGCACAGTAC ACTTCAGCGCAAATGTCAACAATTCAGCCCCTTAGATTGCTTGTGCCTACAAATTATCCGAATTGCTCACCGATACTGTTAGACAAGTTTCCATTTGAAG TCAGTAAAGAGTACGAGGATTTGTCAATAAAAGCTAAATTTAGGTTTAGCATCTCTCTTCGAAGCCTTTCACAGCCCATGTCGCTTGGAGACATAGCCAG GACTTGGGATGTCTGTGCCCATGCTGTTATTTCAGAGCATGCACAACAAAGTGGCGGAGGCACCTTCAGCTCAAAATATGGTTCTTGGGAAAACTGCGTG AGTGCAGCATGA
AA sequence Show only first row Show all	>Potri.001G204900.12 pacid=42791891 polypeptide=Potri.001G204900.12.p locus=Potri.001G204900 ID=Potri.001G204900.12.v4.1 annot-version=v4.1 MDANNWRPTAPGGEPVMDTGDWRTQLQPDARQRIVNKIMETLKRHLPFSGQEGLQELKKIAVRFEEKIYTAATSQSDYLRKISLKMLAMENKSQSTIPNS LPPNSTGSGNKPLDPGGSHSMQSQVHNQGPSLTIPLPANQSQERQQLLSQNMQTGMASSGVQSSSGLTSALPPISSLTQTVPNSVGQNPNMQSISGVSQN PVGNPMGQGVPSNMLANSQRQGRQLVVPQQQQQPQNPQQYFYQQQLQQQLLKQKLQQGNPQHSLVQSHVQQQQQQQQNLLQSNQLQSSQQSGVQTPSVMQ PSIMQTAPLSCLQQNQPSSVQQSTQPMLQQHPQPVLRQQQQPQQTAGIHQQQRLLGQQNNLPNLQQQQLMVQQNNLSSMHQQQLGSQSNVSSLQQQQLLG AQSGNSSMQTNQHPVHMLQQSKVTLQQQAQQSAGTLLPNQGQQSQPQLPQQQLMSQIQSQPVQLQQQSNPLQHDLQQRFQASGSLLQQQNVTDQQKQLYQ SQRALPETSPTSLDSTTQTGHVNVNDWQEEIYQKIKVMKEMYFPEINEIYQRIAAKLPQHDSHPQQPKSEQLDKLKALKTMLERLIMFLQVPKNNIKLNF KEKLGYYENQILNFLNTSRPRKPVPNLQQGQLPQLHMQPMQRPQSQVPQLQSHENQLNPQLQSMNLQGSVPTMQQNNVPSLPHNSLSSLSGVSTSQPNKM NPMQSASNLDSGQGNSLSSLQQAPVGSVQQNPVSSSQPTNFNTLSTQSGVSMLQSNIPLQLNSNMIQQQHLKQQMLQTQQLKQQFQQRQPQQQQRQTQQQ QHLMQKQQMLLQQQQQQLHQQAKQQLPAQMQTQQIPQPHQMNDVNEMKLRQGIGIKPAVFQQHLSTGQRTAFPHQQMKPGSSFPISSPQMLQHASPQLQQ HSSPQIDQQNLLPSLTKTGTPLQSANSPFVVPSPSTPLAPSPVPGDSEKPISGISSNIVHQPTVAQATAPSLAIGTPGISASPLLAEFTSPDGAHGGALT TVSGKSNVMEQPLERMIKAVKSLSPKALSASVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFFTQDGMTGSKKMRRHTSAMPLNVAS SAGSVSDSFKQFTGPETSDLESTVTSSVKRPKIELFLQANHALLEEIREINQRLLDTVVDISDEDVDSTAAAAAAEGGGGTFVKCSFIAVALSPNLKAQY TSAQMSTIQPLRLLVPTNYPNCSPILLDKFPFEVSKEYEDLSIKAKFRFSISLRSLSQPMSLGDIARTWDVCAHAVISEHAQQSGGGTFSSKYGSWENCV SAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15780			unknown protein		Potri.001G204900 [exp]	0	1
AT1G15780			unknown protein		Potri.003G012400 [exp]	1.41	0.9279
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Potri.001G199200 [exp]	2.00	0.9264	MYA1.1
AT2G25050			Actin-binding FH2 (Formin Homo...		Potri.006G263700 [exp]	3.74	0.9088
AT3G44600		AtCYP71, CYP71	cyclophilin 71, cyclophilin71 ...		Potri.009G146400 [exp]	3.87	0.9133
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.007G003400 [exp]	4.24	0.9183	HAC901,Pt-HAC1.4
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Potri.016G069100 [exp]	4.89	0.9087
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Potri.005G224900 [exp]	5.29	0.9134	CPC902,TTN8.3
AT3G26730			RING/U-box superfamily protein...		Potri.014G145300 [exp]	7.07	0.9035
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Potri.003G204300 [exp]	10.67	0.8704
AT3G06010		ATCHR12	Homeotic gene regulator (.1)		Potri.008G149900 [exp]	11.48	0.8972

Compare expression of checked genes

Potri.001G204900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.