Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PIN2.1,PIN10
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57090 523 / 0 MM31, ATPIN2, AGR1, AGR, WAV6, EIR1 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) AT1G23080 495 / 3e-170 PIN7, ATPIN7 ARABIDOPSIS PIN-FORMED 7, Auxin efflux carrier family protein (.1.2.3) AT2G01420 491 / 8e-169 PIN4, ATPIN4 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) AT1G70940 318 / 2e-101 PIN3, ATPIN3 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) AT1G73590 306 / 5e-97 ATPIN1, PIN1 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) AT1G77110 242 / 7e-73 PIN6 PIN-FORMED 6, Auxin efflux carrier family protein (.1) AT5G16530 171 / 2e-48 PIN5 PIN-FORMED 5, Auxin efflux carrier family protein (.1) AT5G15100 152 / 2e-41 ATPIN8, PIN8 PIN-FORMED 8, Auxin efflux carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G139400 [exp] 563 / 0 AT5G57090 950 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Potri.016G035300 [exp] 513 / 1e-177 AT1G73590 743 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.012G047200 [exp] 503 / 1e-173 AT1G73590 870 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.015G038700 [exp] 502 / 3e-173 AT1G73590 858 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.006G037000 [exp] 500 / 7e-173 AT1G73590 756 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.010G112800 [exp] 486 / 1e-166 AT1G70940 952 / 0.0 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) Potri.008G129400 [exp] 483 / 4e-165 AT1G70940 961 / 0.0 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) Potri.005G187500 [exp] 256 / 3e-78 AT1G77110 707 / 0.0 PIN-FORMED 6, Auxin efflux carrier family protein (.1) Potri.002G072200 [exp] 242 / 5e-73 AT1G77110 716 / 0.0 PIN-FORMED 6, Auxin efflux carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001429 [exp] 310 / 5e-98 AT5G57090 837 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10001637 [exp] 307 / 8e-97 AT5G57090 838 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10009685 [exp] 292 / 2e-94 AT1G73590 568 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10018006 [exp] 281 / 1e-92 AT1G73590 353 / 5e-120 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10009054 [exp] 294 / 4e-92 AT1G73590 856 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10020829 [exp] 252 / 1e-78 AT2G01420 506 / 7e-177 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) Lus10020830 [exp] 207 / 3e-64 AT2G01420 308 / 4e-103 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) Lus10009686 [exp] 202 / 2e-62 AT2G01420 288 / 1e-95 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) Lus10042004 [exp] 207 / 2e-61 AT1G73590 539 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10018007 [exp] 193 / 4e-59 AT5G57090 276 / 2e-90 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF03547 [poplar] [flax] Mem_trans Membrane transport protein
Representative CDS sequence Show only first row Show all	>Potri.001G205200.1 pacid=42790092 polypeptide=Potri.001G205200.1.p locus=Potri.001G205200 ID=Potri.001G205200.1.v4.1 annot-version=v4.1 ATGATTTCCGGTAAGGACATTTACCAGGTTGTTTCGGCGTTGGTTCCTCTCTATGCTGCAATGATATTAGCCTATGGTTCAGTGAGATGGTGGAAAGTTT TTACACCAGATCAGTGCGCAGGCATCAATCGTTTTGTTGCAGTTTTTGCAACTCCTTTTCTCGTTTTTGATTTTATATGTTCTAACAACCCTTATAAAAT GAACTTACGCTTCATCGCTGCTGATTCTCTCCAAAAAGTGGTGGTTCTGGTGGTTCTCTTCATTTGGAAAGCCACCGCCAGACGTGGTGACCTTGACTGG ACAATCACTCTTTTTTCTCTATCTACTCTTCCCAACACTCTTGTCATGGGCGTCCCTCTTTTGAAATCCATGTATGGAGAATTCACATCGCCTCTTATGA TTCAAGTTTGTTTCATGCAGAGTGTACTTTGGTACACTCTGCTGCTGTCCATGTTTGAATACAGAGGTGCAAAGAGACTCGTTGCTGGGCAGTTTCCTGA AACAGCTGCCTCTATTTCCTCTTTCAAGGTTGATTCGGCTGTTGTTTCTCTCGGTGGTCACGAACCACTAGAGACGGATGCTGAGATTGATGATGATGGC AAGCTCCGAGTGGTGGTGAGAAGATCAAGTGCAACATCCTCAAATTTCTCATCGCGCGACAGGTTCGACGGATGGAACCCGGTCCTTAGTGTTCATCTTC CACCCAGAGCTTCAAACTTCTCCAGCGTAGAGGTTTTCTCCGTACAATCCTCACCAAGGGCTTCAAGTTACAGGCAGACAGATCTCCCTAACTTAACTAA TAGTTTTGGAGACATTTACTCATTACAATCTTCAAGGAATTCTGTTCCAAGGATTTCTTCGAATCTTGAGGAGGAAATGAGAAGGAAAAATGGAGTTGCT TTTCCAGGTTCTCCAAGCTGTGCAGTACCACAAAAGGAAGGTGGTGGGGCGCCAGCACCTAACAAAGACCTTCACATGTTTGTTTGGAGTTCAAGTATTT CCTCTAATATTTCTGATCATAGATATCTGAGAGCTGATCAAATAAATGGCAGACACACCTACCCTGATCCCTTCAATGGAGCAGATCCTCAAGAGGACAA CATTGCTGCTGCTGCTTCAACAGCGAAGAAACAACAGATGCCTCCGGCGACTGTCGTGGCTCGACTCATCGCTATGATGGTGGGGAGGAAGCTCGTTAGA AACCCTAACACTTACGCAAGCTTGCTGGGCTTGCTATGGTCTTTGATATCATTTAGGTGGAGCATCAAGTTGCCATTGATCGTGGATGGATCTGTAAGAA TATTATCCAATGCTGGTCTGGGAATGGCTATGTTCAGTCTAGGTTTATTTGCAGCGTTACAGCCCAAGGTCATAGCTTCTGGAAAGGTTTTAGCGTTGAT TTCTATGGCTATTAAATTCTTGATAGGACCAGCAGTTCTTGCCGCAACATCTCTTGCCGTTGGCCTTCGCGGTGATCTCCTACGTATAGCTATTGTTCAG GCTGCACTTCCATCAGGCATTCTTCCTTTCATATTCGCCAAGGAGTACAATCTCCACGCGAATATACAGAGCACTTCGTAA
AA sequence Show only first row Show all	>Potri.001G205200.1 pacid=42790092 polypeptide=Potri.001G205200.1.p locus=Potri.001G205200 ID=Potri.001G205200.1.v4.1 annot-version=v4.1 MISGKDIYQVVSALVPLYAAMILAYGSVRWWKVFTPDQCAGINRFVAVFATPFLVFDFICSNNPYKMNLRFIAADSLQKVVVLVVLFIWKATARRGDLDW TITLFSLSTLPNTLVMGVPLLKSMYGEFTSPLMIQVCFMQSVLWYTLLLSMFEYRGAKRLVAGQFPETAASISSFKVDSAVVSLGGHEPLETDAEIDDDG KLRVVVRRSSATSSNFSSRDRFDGWNPVLSVHLPPRASNFSSVEVFSVQSSPRASSYRQTDLPNLTNSFGDIYSLQSSRNSVPRISSNLEEEMRRKNGVA FPGSPSCAVPQKEGGGAPAPNKDLHMFVWSSSISSNISDHRYLRADQINGRHTYPDPFNGADPQEDNIAAAASTAKKQQMPPATVVARLIAMMVGRKLVR NPNTYASLLGLLWSLISFRWSIKLPLIVDGSVRILSNAGLGMAMFSLGLFAALQPKVIASGKVLALISMAIKFLIGPAVLAATSLAVGLRGDLLRIAIVQ AALPSGILPFIFAKEYNLHANIQSTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Potri.001G205200 [exp]	0	1	Pt-PIN2.1,PIN10
AT5G09360		LAC14	laccase 14 (.1)		Potri.001G206200 [exp]	1.73	0.8999
AT3G60130		BGLU16	beta glucosidase 16 (.1.2.3)		Potri.001G226200 [exp]	3.74	0.9008	Pt-PLIN-GEN.19
					Potri.001G306932 [exp]	5.65	0.8852
AT2G26110			Protein of unknown function (D...		Potri.001G008160 [exp]	5.91	0.8865
AT2G31335			unknown protein		Potri.019G012400 [exp]	5.91	0.8891
AT5G05960			Bifunctional inhibitor/lipid-t...		Potri.010G196300 [exp]	6.00	0.8878
AT3G22600			Bifunctional inhibitor/lipid-t...		Potri.002G050500 [exp]	6.92	0.8616
AT2G42320			nucleolar protein gar2-related...		Potri.016G051500 [exp]	7.41	0.8736
AT3G57810			Cysteine proteinases superfami...		Potri.010G057750 [exp]	8.71	0.8475
AT2G20800		NDB4	NAD(P)H dehydrogenase B4 (.1)		Potri.013G147300 [exp]	9.48	0.8035

Compare expression of checked genes

Potri.001G205200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.