Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09420 725 / 0 MTOM64, ATTOC64-V, AtmtOM64 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) AT3G17970 526 / 0 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1) AT1G08980 335 / 2e-109 ATTOC64-I, ATAMI1 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) AT1G56440 90 / 8e-19 TPR5 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G42810 84 / 9e-17 AtPP5, PP5.2, PP5, PAPP5 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) AT1G04190 79 / 9e-16 TPR3 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G08320 76 / 2e-14 TPR8 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G64440 69 / 5e-12 ATFAAH fatty acid amide hydrolase (.1) AT4G12400 69 / 6e-12 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT1G62740 68 / 9e-12 Hop2 Hop2, stress-inducible protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G038600 [exp] 549 / 0 AT3G17970 747 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.012G046900 [exp] 544 / 0 AT3G17970 744 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.013G024200 [exp] 384 / 1e-128 AT1G08980 519 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) Potri.013G024100 [exp] 362 / 1e-119 AT1G08980 518 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) Potri.005G014100 [exp] 86 / 2e-17 AT1G56440 476 / 1e-165 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G070300 [exp] 83 / 2e-16 AT5G64440 488 / 1e-166 fatty acid amide hydrolase (.1) Potri.007G098600 [exp] 82 / 3e-16 AT5G64440 478 / 2e-162 fatty acid amide hydrolase (.1) Potri.013G008400 [exp] 82 / 3e-16 AT1G56440 471 / 1e-163 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.014G141800 [exp] 79 / 4e-15 AT2G42810 895 / 0.0 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042001 [exp] 528 / 0 AT3G17970 714 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10009682 [exp] 527 / 0 AT3G17970 700 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10018004 [exp] 524 / 0 AT3G17970 711 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10009050 [exp] 505 / 6e-173 AT3G17970 675 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10029941 [exp] 369 / 2e-122 AT1G08980 563 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) Lus10004466 [exp] 356 / 2e-117 AT1G08980 549 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) Lus10018179 [exp] 83 / 1e-16 AT4G08320 389 / 9e-134 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10025656 [exp] 81 / 3e-16 AT4G08320 379 / 9e-130 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10031418 [exp] 82 / 4e-16 AT1G56440 436 / 1e-150 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10041189 [exp] 76 / 1e-14 AT1G04190 516 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01425 [poplar] [flax] Amidase Amidase CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.001G205300.1 pacid=42791258 polypeptide=Potri.001G205300.1.p locus=Potri.001G205300 ID=Potri.001G205300.1.v4.1 annot-version=v4.1 ATGAATACAGTAAAAGCAAACATAAAGAACCCAAAGGTGTGGGTATTGGTGATCGGAGTGACAGTGGCAGTTGGGATGGTGGCGGCGGCTGAGACGCGGA GACGGAAAGCCAAATTTAAAGAGGACTTTGGAGCCTTCGTTCAAAGATTCCAGATTCTTCCATTCCCTCAGCCTCCTCCTCCGGCTGCCAAGCAAACCCT CGCTGGGCTCACTTTTGCCATCAACGACATATTTGAGTTGGAGGATTATGTGACGGGTTTTGGGAATCCAGACTGGGCAAGAACGCATGAGGCTGCTGAG AAGACAGCAGTGACAGTGACTGCTCTGTTAAAGAATGGGGCTGTCTGTGTTGGCAAGACTGTTATGGGCGAATTAGGATTCGGGGTGAGTGGCGAAAATA TACATTATGGAACTCCTATCAATCCGGAAATGCCCGCCCATGTCCCCGGAGGTTCTTCTAGTGGTTCAGCTGTGGCCGTTGCCGCTGGGCTCGTTGATTT TGCTCTAGGTACTGATACAATTGGGTGCATTAGAATTCCAGCAGCATTTTGCGGTCTCCTCAGCTACAGACCATCCCATGGGGCTGTATCTACGATTGGA ATTTTGCCAAATTCTCAAAGTTTAGACACTGTTGGATGGCTGGCACGTGATCCCTCTATATTACTTCGTGTTGGGCATACTTTACTTAAACTAAATACTG TGGAACCCAGAAGGGCGAGACGTCTTATTTTTGCTGATGATCTTTTTCAGCTTTCTAAGGTTCCCAAACAGAAGGCTGAAGTTGTTATTAACAAAGCAAT TGAAAATCTATCTGGATACCAGCCTCAACAGCATATTAATTTTGGCCAACATATTTCTTTGAATGTACCGAGTCTAAAAGGGTTCCTTGATCAATCAACA AACATGCAAAATGGAATCTCTAATTTGAAAGCTCTCTCTTCTGCAATGGTTTCATTACAAAGACATGAATTCAAAACAAATCATGAAGATTGGGTTAAAT CAGTGGAACCCAAGTTAGCACTTGATGTCTCTGATAATCTTCTCACAGCCATTAACACTACACATGAGAACATAAAAGCACTTTATGATATCAGGAAAGA GTTGCGAGCTTGCATGCAAATTCTCTTAAAGGATGATGGAATATTGGTTATTCCAACAGTTGCTGATCCACCGTTGAAACTTAATTCAAAGAAACGGGAT ACTGTTGAGTCTCACAATAGAGCACTGATACTTTCAAGCATTGCAAGCATGTCTGGATGTTGTCAGGTTACCATTCCATTGGGAAAGAATGATGGCTGTC CTATCTCTGTTTCATTTATCACATTTCATGGAGGGGACAAGTTTCTTCTTGATACAGTGTTGGATATGTACTCATCTCTTAAAGAGCAAATCAACTTTCT TTCCAATCCAGCACCATTGAAAGACGCCAATGAAAATTTTGATGCTTCAGAACTCTTGAAAGAAAAGGGCAATGCTGCATATAAGGGGAAGCAGTGGAAT AAGGCTGTTAATTACTACAGTGAAGCTATTAAATTGAATGGGAAAAATGCAACTTACTATTCCAACCGGGCAGCAGCTTACTTACAATTGGGATGCTTTC AGAAAGCTGAAGAAGACTGCAATATGGCAATATCACTGGATAAAAAGAATGTGAAGGCATATCTGAGGCGTGGAACAGCTAGAGAATCACTCCTCTTCTA TAAAGACGCAGCTCAAGATTTCAAGCATGCTCTTGTCCTTGAACCGCAAAATAAGGTAGCCAGACATGCTGAAAAGAGACTCAGAAAACTTATGAGTTGA
AA sequence Show only first row Show all	>Potri.001G205300.1 pacid=42791258 polypeptide=Potri.001G205300.1.p locus=Potri.001G205300 ID=Potri.001G205300.1.v4.1 annot-version=v4.1 MNTVKANIKNPKVWVLVIGVTVAVGMVAAAETRRRKAKFKEDFGAFVQRFQILPFPQPPPPAAKQTLAGLTFAINDIFELEDYVTGFGNPDWARTHEAAE KTAVTVTALLKNGAVCVGKTVMGELGFGVSGENIHYGTPINPEMPAHVPGGSSSGSAVAVAAGLVDFALGTDTIGCIRIPAAFCGLLSYRPSHGAVSTIG ILPNSQSLDTVGWLARDPSILLRVGHTLLKLNTVEPRRARRLIFADDLFQLSKVPKQKAEVVINKAIENLSGYQPQQHINFGQHISLNVPSLKGFLDQST NMQNGISNLKALSSAMVSLQRHEFKTNHEDWVKSVEPKLALDVSDNLLTAINTTHENIKALYDIRKELRACMQILLKDDGILVIPTVADPPLKLNSKKRD TVESHNRALILSSIASMSGCCQVTIPLGKNDGCPISVSFITFHGGDKFLLDTVLDMYSSLKEQINFLSNPAPLKDANENFDASELLKEKGNAAYKGKQWN KAVNYYSEAIKLNGKNATYYSNRAAAYLQLGCFQKAEEDCNMAISLDKKNVKAYLRRGTARESLLFYKDAAQDFKHALVLEPQNKVARHAEKRLRKLMS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G09420		MTOM64, ATTOC64...	outer membrane 64, ARABIDOPSIS...		Potri.001G205300 [exp]	0	1
AT1G54380			spliceosome protein-related (....		Potri.007G124150 [exp]	15.55	0.7764
AT1G09820			Pentatricopeptide repeat (PPR-...		Potri.005G014500 [exp]	17.43	0.7717
AT3G52210			S-adenosyl-L-methionine-depend...		Potri.010G233100 [exp]	25.29	0.7543
AT1G10270		GRP23	glutamine-rich protein 23 (.1)		Potri.003G002950 [exp]	28.14	0.7655
AT3G62900			CW-type Zinc Finger (.1)		Potri.005G028700 [exp]	28.19	0.7662
AT1G55590			RNI-like superfamily protein (...		Potri.011G169800 [exp]	30.85	0.7428
AT5G06350			ARM repeat superfamily protein...		Potri.011G095700 [exp]	32.31	0.7705
AT5G15700			DNA/RNA polymerases superfamil...		Potri.004G111600 [exp]	37.58	0.7560
AT1G24290			AAA-type ATPase family protein...		Potri.011G023800 [exp]	37.74	0.7478
AT1G78160		APUM7	pumilio 7 (.1)		Potri.002G095400 [exp]	39.37	0.7325

Compare expression of checked genes

Potri.001G205300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.