Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33520 1065 / 0 AtHMAC6, HMA6, PAA1 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) AT5G21930 538 / 1e-177 ATHMA8, HMA8, PAA2 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) AT1G63440 333 / 5e-99 HMA5 heavy metal atpase 5 (.1) AT5G44790 301 / 2e-87 HMA7, RAN1 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) AT4G30110 220 / 2e-59 ATHMA2, HMA2 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) AT2G19110 216 / 1e-57 ATHMA4, HMA4 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) AT4G37270 150 / 6e-37 ATHMA1, HMA1 ARABIDOPSIS THALIANA HEAVY METAL ATPASE 1, heavy metal atpase 1 (.1) AT4G30120 145 / 2e-36 ATHMA3, HMA3 A. THALIANA HEAVY METAL ATPASE 3, heavy metal atpase 3 (.1) AT3G60330 75 / 2e-13 AHA7 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) AT1G17260 74 / 4e-13 AHA10 autoinhibited H\(+\)-ATPase isoform 10, autoinhibited H(+)-ATPase isoform 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G024000 [exp] 1425 / 0 AT4G33520 1078 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.018G047800 [exp] 543 / 1e-178 AT5G21930 1193 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) Potri.003G125600 [exp] 323 / 3e-95 AT1G63440 1527 / 0.0 heavy metal atpase 5 (.1) Potri.001G019100 [exp] 322 / 5e-95 AT1G63440 1043 / 0.0 heavy metal atpase 5 (.1) Potri.001G105800 [exp] 321 / 1e-94 AT1G63440 1538 / 0.0 heavy metal atpase 5 (.1) Potri.003G125700 [exp] 314 / 4e-92 AT1G63440 1395 / 0.0 heavy metal atpase 5 (.1) Potri.003G075700 [exp] 302 / 1e-87 AT5G44790 1526 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Potri.001G158900 [exp] 300 / 8e-87 AT5G44790 1465 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Potri.006G076900 [exp] 204 / 7e-54 AT4G30110 1051 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023777 [exp] 1182 / 0 AT4G33520 1180 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Lus10038070 [exp] 461 / 5e-148 AT5G21930 1146 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) Lus10008309 [exp] 319 / 8e-94 AT1G63440 1491 / 0.0 heavy metal atpase 5 (.1) Lus10031273 [exp] 311 / 4e-91 AT1G63440 1040 / 0.0 heavy metal atpase 5 (.1) Lus10036225 [exp] 280 / 1e-79 AT5G44790 1402 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10038364 [exp] 278 / 5e-79 AT5G44790 1441 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10031840 [exp] 233 / 6e-64 AT5G44790 573 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10006955 [exp] 207 / 4e-55 AT2G19110 1072 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) Lus10025467 [exp] 203 / 1e-53 AT4G30110 1073 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) Lus10009789 [exp] 190 / 3e-52 AT5G21930 447 / 1e-149 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase PF00403 [poplar] [flax] HMA Heavy-metal-associated domain CL0137 [poplar] [flax] HAD PF12710 [poplar] [flax] HAD haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.001G205400.2 pacid=42790976 polypeptide=Potri.001G205400.2.p locus=Potri.001G205400 ID=Potri.001G205400.2.v4.1 annot-version=v4.1 ATGGACTCTGCATTGGCTATCTCGGCTACGGCATTGCCTCTCTTCACCTTATCCAAAGTCAACCGTCATTTCATCACTCACAATGCTCGTTCCTTTCTCC GCCACTCCTCGTCTCAACGCGGCACTCTCCGACTCAGTTCCATCTGCTCGCACAACAACGACGCCCTTGCTTCTTCTCCTTTTCTGTGCACGGTGGTCCC GCTGCTACGCCGCCGTTTGGAATGCGTTTCCAGCTCCGCGGCGTCCTTCGGGACCTCGTCCGGCGGCGGCGGCGGAGGCGGAGGTGGAGGCGAGTTTGGC AGCGGCGGAGGAGGTGGTGGATCGGACGGTGGTGACGCGGAGTCGAACTCGGTTGCGGGAGCGGTGGGCGCGGAGGAGGTTTCGGCGCTGTCGCCGGATG TTATCATACTTGATGTTGGAGGAATGACGTGTGGGGGATGTGCAGCTAGTGTCAAAAGAATACTTGAAAGTCAACCGCAAGTATCTTCTGCTAGTGTCAA TCTCGCAACAGAGACTGCAATAGTGTGGCCAGTATCTGAAGCAAAAGTTGTACCCAACTGGCAGAAAGAGCTCGGTGAGGCACTTGCAAAGCATCTGACC AGTTGTGGTTTCATGTCTAACCTTCGAGATGCTGGAAGGCAGAATTTCTTCAAATTTTTTGAAAAGAAAATGGATGAAAAGCGTGATCGCCTAAAAGAAA GCAGTCATCAGCTTGCTGTCTCTTGTGCTCTCTGTGCTGTATGCCTCCTTGGTCATGTTTCTCATATTTTTGCCGCTAAGCCTCCATGGATCCATGTGTT TCATTCTGTAGGATTCCATGTGTCTTTGTCTTTGTTTACATTGCTTGGTCCTGGGCGTCAACTTATTCTTGATGGTGTTAAAAGCCTTTCTAAGGGGGCT CCAAATATGAACACTTTAGTAGGTCTTGGGGCGTTATCCTCATTTGCTGTTAGCTCATTAGCTGCATTAATACCAAAGCTGGGTTGGAAGGCATTCTTTG AGGAACCGATTATGTTAATAGCTTTTGTCTTGCTAGGAAGGAATCTTGAACAGAGAGCTAAAATTAAAGCAACCAGTGATATGACTGGACTCCTAAGTGT TTTACCTACAAAAGCTCGTCTTGTGGTCAATGGTGATGCAAAAGACCTGGGCTCAATTGTTGAAGTTCCTTGCAGCAGCCTCTCTGTTGGAGACAAAATT GTTGTCCTACCTGGTGATCGTGTTCCAGCAGATGGAACAGTCACAGCTGGTAGAAGCACCATTGATGAGTCGAGTTTCACAGGGGAGCCATTGCCAGTAA CCAAACTACCTGGGAGTCAAGTATCAGCTGGAAGTATAAACCTCAATGGAACTCTAACAATTGAAGTCAAAAGACCAGGGGGTGAGACTGCCATGGGAGA CATTGTTCGATTGGTGGAAGAAGCACAGAGCAGGGAAGCTCCAGTACAACGCTTGGCTGACAAGGTGTCTGGGCACTTTACTTATGGGGTGATGACAATT TCAGCAGCTACATTTGTGTTCTGGAGCATGTTTGGGACACGCATTCTACCTGCAGCTTTGAACCAAGGAAATCCAATTTCTCTAGCTCTACAACTCTCTT GCAGTGTTTTGGTTGTTGCTTGTCCATGTGCGCTTGGCCTGGCCACACCTACTGCTGTACTGGTTGGAACTTCGTTGGGAGCAACAAGAGGATTACTTTT GCGTGGAGGAAATGTTCTGGAGAAGTTCTCAATGGTGAATTCTGTTGTGTTTGACAAAACAGGAACCCTAACAATTGGCAGACCTGCTGTAACGAAAGTT GTTCCACTTGGAGGCATGAAAATTACAGATTCACAACTAAATCCAGATGCTACGTTGTCTGAGGTTGAACTCTTGAAGTTAGCTGCAGGCGTGGAATCAA ATACTATTCATCCGGTTGGAAAAGCTATAGTAGAAGCTGCACAGGCTGCTGGTTGTCAGAATGTGAAGGTGACCGATGGAACATTCATGGAGGAACCTGG GTCTGGTGTCGTTGCTACTATTGAGAATAAGGTTGTGTCTATTGGAACACTAGACTGGATTCAAAGGCATGGGGTTGATGAGAAACCATTTCAAGAAGTG GAAGATCTTAAGAATCAGTCTGTTGTCTATGTTGGAGTGGATAATACCCTTGCTGGACTTATCTACTTTGAAGATCAGATTAGAGAAGATGCTCGACAAG TTGTTGAATCCTTGTCCAGTCAGGGAATAAATGTGTACATGTTGTCTGGTGACAAAAAGAGTACTGCCGAGCATGTTGCTTCACTTGTTGGCATTCCAAA AGAGAAGGTGCTGTCTGGAGTTAAGCCAGATGAAAAGAAAAGGTTCATCAGTGAACTTCAGAAGGATCAGAGCATAGTTGCCATGGTCGGTGATGGAATA AATGATGCAGGTGCCTTGGCTGAGTCACATGTTGGAGTTGCCATGGGAGGTGGTGTTGGAGCTGCCAGTGAGGTATCCTCTATCGTGCTGATGGGTAACA GATTGTCACAGGTGCTTGATGCACTGGAGCTGAGCAGGCTAACCATGAAAACTGTGAAGCAAAATCTTTGGTGGGCCTTTGCATATAACATCGTTGGAAT TCCGATTGCAGCTGGAATGTTACTGCCTGTAAATGGGACCATACTGACACCGTCAATTGCAGGAGCCCTCATGGGTTTGAGTTCTATTGGAGTGATGACA AATTCATTGCTTCTGAGATTCAAATTCTCATTGAAGCAGAAAAAAGTCTATGGAGCATCTCCAAACACCAAGATTGATGTGGATTCTGTTCTTTTGTACC AGAAGGAGAAAACAAAACAGCCTTATTCTGATTCTCGATGGGGAGAGGTGTGA
AA sequence Show only first row Show all	>Potri.001G205400.2 pacid=42790976 polypeptide=Potri.001G205400.2.p locus=Potri.001G205400 ID=Potri.001G205400.2.v4.1 annot-version=v4.1 MDSALAISATALPLFTLSKVNRHFITHNARSFLRHSSSQRGTLRLSSICSHNNDALASSPFLCTVVPLLRRRLECVSSSAASFGTSSGGGGGGGGGGEFG SGGGGGGSDGGDAESNSVAGAVGAEEVSALSPDVIILDVGGMTCGGCAASVKRILESQPQVSSASVNLATETAIVWPVSEAKVVPNWQKELGEALAKHLT SCGFMSNLRDAGRQNFFKFFEKKMDEKRDRLKESSHQLAVSCALCAVCLLGHVSHIFAAKPPWIHVFHSVGFHVSLSLFTLLGPGRQLILDGVKSLSKGA PNMNTLVGLGALSSFAVSSLAALIPKLGWKAFFEEPIMLIAFVLLGRNLEQRAKIKATSDMTGLLSVLPTKARLVVNGDAKDLGSIVEVPCSSLSVGDKI VVLPGDRVPADGTVTAGRSTIDESSFTGEPLPVTKLPGSQVSAGSINLNGTLTIEVKRPGGETAMGDIVRLVEEAQSREAPVQRLADKVSGHFTYGVMTI SAATFVFWSMFGTRILPAALNQGNPISLALQLSCSVLVVACPCALGLATPTAVLVGTSLGATRGLLLRGGNVLEKFSMVNSVVFDKTGTLTIGRPAVTKV VPLGGMKITDSQLNPDATLSEVELLKLAAGVESNTIHPVGKAIVEAAQAAGCQNVKVTDGTFMEEPGSGVVATIENKVVSIGTLDWIQRHGVDEKPFQEV EDLKNQSVVYVGVDNTLAGLIYFEDQIREDARQVVESLSSQGINVYMLSGDKKSTAEHVASLVGIPKEKVLSGVKPDEKKRFISELQKDQSIVAMVGDGI NDAGALAESHVGVAMGGGVGAASEVSSIVLMGNRLSQVLDALELSRLTMKTVKQNLWWAFAYNIVGIPIAAGMLLPVNGTILTPSIAGALMGLSSIGVMT NSLLLRFKFSLKQKKVYGASPNTKIDVDSVLLYQKEKTKQPYSDSRWGEV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33520		AtHMAC6, HMA6, ...	Arabidopsis thaliana heavy met...		Potri.001G205400 [exp]	0	1
AT1G44350		ILL6	IAA-leucine resistant (ILR)-li...		Potri.002G082400 [exp]	3.00	0.8938
AT5G42440			Protein kinase superfamily pro...		Potri.002G065400 [exp]	3.16	0.9068
AT4G31780		UGT81A1, EMB279...	UDP-glycosyl transferase 81A1,...		Potri.006G266500 [exp]	4.47	0.8689
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Potri.010G188000 [exp]	5.29	0.9038
AT1G73325			Kunitz family trypsin and prot...		Potri.019G124750 [exp]	10.95	0.8805
AT2G36800		UGT73C5, DOGT1	UDP-GLUCOSYL TRANSFERASE 73C5,...		Potri.012G048700 [exp]	11.95	0.8686	Pt-GT4.1
AT2G26530		AR781	Protein of unknown function (D...		Potri.014G034900 [exp]	14.56	0.8883	AR781.2
AT3G12570		FYD	FYD (.1.2.3.4)		Potri.008G054100 [exp]	14.79	0.8238
AT3G22890		APS1	ATP sulfurylase 1 (.1)		Potri.008G159000 [exp]	15.96	0.8178	APS1.2
AT2G32300		UCC1	uclacyanin 1 (.1)		Potri.018G129200 [exp]	16.27	0.8851

Compare expression of checked genes

Potri.001G205400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.