Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64170 335 / 5e-106 dentin sialophosphoprotein-related (.1.2) AT3G54500 77 / 2e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T127206 [exp] 117 / 3e-27 AT3G54500 355 / 2e-113 unknown protein Potri.003G200600 [exp] 114 / 4e-26 AT3G54500 298 / 3e-93 unknown protein Potri.T126606 [exp] 86 / 3e-18 AT3G54500 191 / 2e-56 unknown protein Potri.T126406 [exp] 85 / 3e-17 AT3G54500 191 / 6e-55 unknown protein Potri.T126906 [exp] 81 / 1e-15 AT3G54500 156 / 4e-41 unknown protein Potri.003G200300 [exp] 65 / 1e-11 AT3G54500 108 / 8e-28 unknown protein Potri.001G031800 [exp] 57 / 2e-08 AT5G06980 75 / 7e-15 unknown protein Potri.003G193800 [exp] 54 / 2e-07 AT3G12320 66 / 5e-12 unknown protein Potri.001G025100 [exp] 51 / 2e-06 AT3G54500 325 / 4e-102 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009319 [exp] 431 / 5e-138 AT1G01860 417 / 4e-137 PALEFACE 1, Ribosomal RNA adenine dimethylase family protein (.1) Lus10015846 [exp] 405 / 2e-133 AT5G64170 225 / 8e-66 dentin sialophosphoprotein-related (.1.2) Lus10024170 [exp] 78 / 2e-14 AT3G54500 305 / 5e-94 unknown protein Lus10039553 [exp] 77 / 3e-14 AT3G54500 316 / 3e-98 unknown protein Lus10024129 [exp] 59 / 9e-09 AT3G12320 80 / 8e-17 unknown protein Lus10005384 [exp] 57 / 3e-08 AT3G12320 79 / 1e-16 unknown protein Lus10008671 [exp] 49 / 7e-06 AT3G12320 65 / 1e-11 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G205800.13 pacid=42790636 polypeptide=Potri.001G205800.13.p locus=Potri.001G205800 ID=Potri.001G205800.13.v4.1 annot-version=v4.1 ATGTCAGATTTGTGCATGTATGAGCTTGAAGATAATCTGTGGGATGAATTCAGTGTGAGTGATGATCACATAGTACCTCATCCTGGTCATGAATATGGAG ATCGCTTTGTAGCTCAGGGCATCAAGCAAAAGAAACCTGAAAGTAAGATAATTAATGTTGCGAATAATGAAGATGATTCGCTTACCTATAGCACTCAGGA AGAGGAGGAAGCTAGCTTACCTACTCTGGTAAAGAAGGATACAATGTTAGAAAAGGATTCGTGGTCTAACACACCTGATGGTGTGTTTCCTACCTCACGA GATAGTGGCGCAGTCAAAGATTTTATAACAATAAGATCTGAAGAAACAAGCATGTCCAGTCATTGTTTAAAAAATGGGAATATTGATTCAGTTGGCAGTG AGTTCTGTGCCAGTGATCCTACATCAGATGAAAAGTGTTCCGCAGTTGATAATAACCTGTATAGTTATCCACTCAGTCACATTTCAAAGACAGACAATGA TCTCAGCTTCTTTGATAATGACCGTGAAGACAAAGAAAGCAGTGATCCCTTATATTACGGGTGGCCTGATGATATAGGAAATTTTGAGGATGTTGATAGG ATGTTTAGAAGTTGTGATTCAACATTTGGGTTGGGGAGTCTGAGCAATGAAGATGACTTGTGCTGGTTTTCATCTTCTGATTTCACTGAAAGATCTGATG ATGCGTTGAATCTGGGTTCCAAGTTCTTAAATTCTGAGGCAAGTGCATTGGATAGTGTATCAGAACATCCTGAAGCTTCACAACTAAGCAGTGATGACCC TTCAGTCTATGATTCCAACAAGAAAAGCATTTTCACAGATGACAAAATAAGCTCCAGGACTTCCAGTGCTGTTGACCATTCTTCTCTTGGTTACTTAACA TTTCTGAATGGGTCAGAGACAAAATCTGCAAGTATGGATGACTTGGTACTCAAGGAAAAGATGAATTGGAACAAAAGGCAGGCAAGGCACAACAACCGAT TTGAAGGAAGGAGAAAAGACAGTGATATTGAAAATGGTTCTTTTCCTCTCAACGTTAACATGAAGCATTTCGCAGATACAAAGCATTCATCTGGAGACTC ATCCCATCAAGTTTTACCTCTTCTAGGCATCCAGCAGCATAAACAAATAATAGGATCCAATTCCTTAAATTACATGCAGACACATATTCCATTGATACAC ATCGACTACAGTCATTCTTCAGATCAAATTTCGACCTGTCCAACTCAATCTAGTGTTAAATCTGAAAACAATGGCTACCCATCTCCTTCTCCAAAGGAGT CTTCCCATGCATCAAATCATGTACGGTCCATTGAGAGTGCTAATGGTCCTGACTTTGAGGCTCCTGCTATAACAACAAATGAGAATGAGGAAAATCTGTA TCATTGCCAGGAACCATCATCTGGTAGGAATCTCAAACCTGCAAACATGGTAGGCCCAGCAGAATTTTATGGTCCAGTTTCAGCTAAGAAGGTAGCCTGT CAGTCTGAATATGATATCAAAGGAGTTGGCACAGGGATTCCAGCAGAACTAGACACTTCAAATGCACAGGAGAGCTCTTGCATGAGTTCTGTGTTGGATG GAATTTCACTAGAAGCAACTAGTTTTCGCCAACTTCAACAAGTCATGGAACAGTTGGATATTAGGACAAAACTATGTATAAGGGATAGCCTGTATCGCTT AGCTAGAAGCGCTGAGCAAAGGCATAATCATAGGAATGGAAGTGGTGGCAAGAGAGATGGCGGAGACAGAAGTGGGGAATTGATGGCTGAAGAAGCTGAC AAGACCGGATTAATGGATATGGAAACTGATACCAATCCAATAGATCGATCAATAGCGCATTTGCTGTTTCACAGGCCATCAGACCCATCTTTGATGCCTG CTATTGATGCCTCGTCTCTCAAGTCTCACACCATGATTAGCAGCTTGCCGGTGATGACCAAGGAACATTGGCAGGAGGAAACTGCCACTGGTGCGGATGG AAGTCTGTTGATGAGTAATGACAAACAGTAA
AA sequence Show only first row Show all	>Potri.001G205800.13 pacid=42790636 polypeptide=Potri.001G205800.13.p locus=Potri.001G205800 ID=Potri.001G205800.13.v4.1 annot-version=v4.1 MSDLCMYELEDNLWDEFSVSDDHIVPHPGHEYGDRFVAQGIKQKKPESKIINVANNEDDSLTYSTQEEEEASLPTLVKKDTMLEKDSWSNTPDGVFPTSR DSGAVKDFITIRSEETSMSSHCLKNGNIDSVGSEFCASDPTSDEKCSAVDNNLYSYPLSHISKTDNDLSFFDNDREDKESSDPLYYGWPDDIGNFEDVDR MFRSCDSTFGLGSLSNEDDLCWFSSSDFTERSDDALNLGSKFLNSEASALDSVSEHPEASQLSSDDPSVYDSNKKSIFTDDKISSRTSSAVDHSSLGYLT FLNGSETKSASMDDLVLKEKMNWNKRQARHNNRFEGRRKDSDIENGSFPLNVNMKHFADTKHSSGDSSHQVLPLLGIQQHKQIIGSNSLNYMQTHIPLIH IDYSHSSDQISTCPTQSSVKSENNGYPSPSPKESSHASNHVRSIESANGPDFEAPAITTNENEENLYHCQEPSSGRNLKPANMVGPAEFYGPVSAKKVAC QSEYDIKGVGTGIPAELDTSNAQESSCMSSVLDGISLEATSFRQLQQVMEQLDIRTKLCIRDSLYRLARSAEQRHNHRNGSGGKRDGGDRSGELMAEEAD KTGLMDMETDTNPIDRSIAHLLFHRPSDPSLMPAIDASSLKSHTMISSLPVMTKEHWQEETATGADGSLLMSNDKQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64170			dentin sialophosphoprotein-rel...		Potri.001G205800 [exp]	0	1
AT3G54500			unknown protein		Potri.001G025100 [exp]	2.44	0.7386
AT3G55580			Regulator of chromosome conden...		Potri.008G059800 [exp]	3.74	0.7386
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Potri.014G106800 [exp]	4.89	0.7450
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Potri.002G180800 [exp]	5.47	0.7930
AT3G55580			Regulator of chromosome conden...		Potri.010G199100 [exp]	9.16	0.6957
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Potri.001G441180 [exp]	10.58	0.7060
AT4G18530			Protein of unknown function (D...		Potri.019G053000 [exp]	14.14	0.6732
AT4G13640	GARP	UNE16	unfertilized embryo sac 16, Ho...		Potri.017G054800 [exp]	18.84	0.7421
AT5G06980			unknown protein		Potri.001G031800 [exp]	21.35	0.7307
AT2G30520		RPT2	ROOT PHOTOTROPISM 2, Phototrop...		Potri.019G131600 [exp]	21.63	0.7597	RPT2.3

Compare expression of checked genes

Potri.001G205800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.