Plant FIBer expression Database

Potri.001G206400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G13840 538 / 0 Polymerase/histidinol phosphatase-like (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036157
[exp]
571 / 0 AT2G13840 517 / 0.0 Polymerase/histidinol phosphatase-like (.1)
Lus10003406
[exp]
0 / 1 AT1G36050 325 / 2e-109 Endoplasmic reticulum vesicle transporter protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0034 Amidohydrolase PF02811 PHP PHP domain
Representative CDS sequence
>Potri.001G206400.1 pacid=42788277 polypeptide=Potri.001G206400.1.p locus=Potri.001G206400 ID=Potri.001G206400.1.v4.1 annot-version=v4.1
ATGGTGGATGATGGTTTTGTGAACGCTTCTTCTAATTGCAACGGCAACCAAGAGAGCCCAAGAAAAACAAAAGATATTAATAAGAAGAAGAAGAAGAAGA
AGCGTGGCGGGAGCAAGAAGAAGATGACTGTTGAGCAGACCTTGGCTTCCAAATCTGTCAGCGAATGGGTTTACTTGGATCGGAAATTGGTTGCCGATGA
TTTCGATTTTGGAGTGCACAAGACTGTGATGATGAGGAGAGAAGACAAGGTTGTCTTTGAATTGCATACTCATTCCAAGTTCAGTGATGGCTTCTTGTCT
CCTTCCAAGCTTGTGGAGCGAGCTCATGGAAATGGGGTGAAAGTTCTTGCTCTCACTGATCATGACACAATGTCTGGTATACCTGAAGCTACAGAAGCAG
CTCGCAGATTTGGCATCAAGATAATCCCAGGTGTTGAAATAAGCACAATGTTCTCTCCAAGAAATCCTGAAGCAGAGGAGCCAGTGCACATCCTGGCATA
TTACAGCAGCGGTGGGCCAACTAGGTCTGATGAACTGGAAAAGTTCTTGGCTAACATAAGAGATGGTCGTTACCTTCGTGCAAAGGACATGGTCTTGAAA
CTCAATAAACTCAAGTTGCCTCTTAAGTGGGAGCACGTTACTAGAATTACAGGAAAAGGAGTTGCTCCTGGAAGACTGCATGTGGCTCGAGCTATGGTTG
AAGCAGGCTACGTAGAGAACCTGAAACAAGCTTTTGCCAGATATCTGTATGATGGTGGACCTGCTTATTCCACAGGAAATGAGCCTCTTGTAGAGGAGGC
AGTACAATTGATATGTGAAACGGGGGGTGTTGCTGTGCTAGCTCATCCTTGGGCATTGAAAAACCCTGTTGCAATAATACAAAGGTTGAAAGATGCAGGT
CTTCATGGGATGGAGGTTTACAGAAGTGATGGCAAACTGGCTGTATACAGCGACCTAGCAGATGCTTATGGTCTTTTGAAGCTAGGAGGGTCCGATTATC
ACGGAAGAGGTGGGAACAGTGAATCTGAACTAGGAAGTGTTAACCTCCCAGCAATTGCTTTGCACGACTTCCTGAAGGTAGCACGCCCAATCTGGTATCA
TGCCATAAAAGATATTTTCGAGAGATATGCTGAGGAGCCCTCTGATTTGAATCTAGCGAGGATAACAAAGTTTGGGGGAACAAAGATTTTAAAGGGAAAT
TCCCCAATGAGTTGTGGGAAGGACTTGATTGATCGTTGCTTATCATTGTGGTTAACAACTGAGGAGAGGCAGACAGCCGAGTTTGAGGCCATTAAAATAA
AGCTCTCCTGTGTTACGATTAATCAAGGTGTGGGACTCGCGTTCCTATAG
AA sequence
>Potri.001G206400.1 pacid=42788277 polypeptide=Potri.001G206400.1.p locus=Potri.001G206400 ID=Potri.001G206400.1.v4.1 annot-version=v4.1
MVDDGFVNASSNCNGNQESPRKTKDINKKKKKKKRGGSKKKMTVEQTLASKSVSEWVYLDRKLVADDFDFGVHKTVMMRREDKVVFELHTHSKFSDGFLS
PSKLVERAHGNGVKVLALTDHDTMSGIPEATEAARRFGIKIIPGVEISTMFSPRNPEAEEPVHILAYYSSGGPTRSDELEKFLANIRDGRYLRAKDMVLK
LNKLKLPLKWEHVTRITGKGVAPGRLHVARAMVEAGYVENLKQAFARYLYDGGPAYSTGNEPLVEEAVQLICETGGVAVLAHPWALKNPVAIIQRLKDAG
LHGMEVYRSDGKLAVYSDLADAYGLLKLGGSDYHGRGGNSESELGSVNLPAIALHDFLKVARPIWYHAIKDIFERYAEEPSDLNLARITKFGGTKILKGN
SPMSCGKDLIDRCLSLWLTTEERQTAEFEAIKIKLSCVTINQGVGLAFL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G13840 Polymerase/histidinol phosphat... Potri.001G206400
[exp]
0 1
AT1G78420 RING/U-box superfamily protein... Potri.011G096000
[exp]
1.00 0.9308
AT1G24310 unknown protein Potri.008G176100
[exp]
1.41 0.9262
AT5G63050 EMB2759 embryo defective 2759 (.1.2) Potri.012G088600
[exp]
1.73 0.9180
AT5G16790 AtTHO7 Tho complex subunit 7/Mft1p (.... Potri.013G080200
[exp]
2.64 0.8900
AT5G63010 Transducin/WD40 repeat-like su... Potri.014G000900
[exp]
3.87 0.8964
AT1G22800 S-adenosyl-L-methionine-depend... Potri.013G101700
[exp]
5.29 0.8734
AT3G55030 PGPS2 phosphatidylglycerolphosphate ... Potri.008G046700
[exp]
6.48 0.8464
AT4G38100 unknown protein Potri.005G147801
[exp]
7.07 0.8780
AT2G28605 Photosystem II reaction center... Potri.007G100800
[exp]
9.79 0.8905
AT3G13550 EMB144, COP10, ... FUSCA 9, EMBRYO DEFECTIVE 144,... Potri.001G089300
[exp]
10.00 0.8609

Potri.001G206400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.