Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64550 675 / 0 loricrin-related (.1) AT5G09670 613 / 0 loricrin-related (.1.2) AT1G64140 416 / 2e-137 unknown protein AT4G12020 199 / 7e-54 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G023300 [exp] 1060 / 0 AT5G64550 716 / 0.0 loricrin-related (.1) Potri.003G134200 [exp] 432 / 4e-143 AT1G64140 690 / 0.0 unknown protein Potri.001G097200 [exp] 431 / 1e-142 AT1G64140 718 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019307 [exp] 665 / 0 AT5G64550 639 / 0.0 loricrin-related (.1) Lus10011515 [exp] 664 / 0 AT5G64550 652 / 0.0 loricrin-related (.1) Lus10032329 [exp] 432 / 2e-143 AT1G64140 690 / 0.0 unknown protein Lus10024712 [exp] 241 / 4e-75 AT1G64140 298 / 2e-97 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G206600.1 pacid=42790959 polypeptide=Potri.001G206600.1.p locus=Potri.001G206600 ID=Potri.001G206600.1.v4.1 annot-version=v4.1 ATGAATCTTATCAAAAAGGGCCCACGATTTTCTCATAATAATGAGCTTCCAAAGAATGACTGTTTTGGTGATACCGCTTTGAGCTTGAACTGCCTTGGAT ATGGAGGAAGCAGTTCGACCAATGCTGAGGGCGCTGATAATAATCTTAAAGTTGATTTCTCTAATGCTTCTGATGACGGTTGCAAGTTGGTGCTTGGATT GGGTCCAACACCAAGTGCATATTTTGATGATTGTTACAGCTTTGGGGTCAACAAAAATAAAGGGCTGGCTTCTGGTGCTATATTTCCCAAGGGGCTGTTG TCTGAGAGCGATTCAATCCTAAAACTTGGCCTTTCTGGAGGGGCTAAGGAAGCTTTGAGTGGTCTCGGCTGTGCAATTGAGGGGACTGATACAGATACTC CTATGCTGAACCAAATTTCTGGTGATGATATTAGAGTCCCGATTCCTGTTGTCGATGAGGGTTCCACCTCAGCAAAGAAGTCTGGTGGCTATATAGCATC ACTTCTTTTGGCTCCTAGAATGGATGTTGGAAAAGCTCTGTCACAGACAGAACTTCTCAACTTTGGGACTGGATCGCATCATCAATTTCAGCTGAGCCAT GAACTACCTGCCAACGCAGATTTCTCTGTGGGCACTACTTCTGAGCAAGCGATTTCATCCACTTCTTCTGACCACAGAACTAAAATTCCAAAGAAATGCA AGTTCTTTGGTTGCTCAAAGGGAGCACGGGGGGCATCAGGCCTTTGTATTGGTCACGGGGGCGGACAGCGATGCCATAAGCCAGGTTGCAACAAGGGAGC TGAGAGCCGAACAGCATATTGCAAGGCCCATGGTGGAGGAAGAAGGTGTCAACACTTGGGTTGCACTAAAAGCGCAGAGGGGAAGACAGAAAATTGCATC GCCCATGGTGGTGGCAGAAGATGTGGGTTTCCAGGGGGATGCGCTAAGGCTGCACGAGGCAAGTCAGGGCTTTGTATTAGACATGGCGGGGGGAAGAGGT GTAAGGTTGAAGGCTGCACCCGTAGTGCTGAAGGACAGGCTGGGTTGTGTATTTCTCATGGGGGTGGACGCCGTTGTTTGCACCAAGCATGTACGAAGGG TGCTCAGGGGAGTACCATGTTCTGCAAAGCTCATGGTGGGGGAAGGCGATGCATATTTGCAGGATGCAGCAAAGGAGCCGAAGGGAGTACGCCGTTGTGC AAGGGACATGGTGGGGGAAAGCGCTGCCTGTTTGATGGTGGTGGAATTTGTCCAAAAAGTGTCCATGGAGGGACAGACTTTTGTGTTGCCCATGGTGGTG GAAAGAGGTGTGTTGTGCCAGGCTGTACAAAGAGTGCGCGTGGCCGTACTGATTGTTGTGTCAGGCATGGTGGTGGGAAGCGGTGCAAGTTTGAAGATTG TGGGAAGAGTGCCCAAGGCAGCACTGATTTCTGCAAGGCTCATGGCGGGGGTAAACGATGTACCTGGGGTGAGGGAAAATGTGAGAAGTTTGCCAGGGGT AAGAGTGGTCTATGTGCTGCGCACAGCAGCATGGTCCAAGAGAGGAAGGCAAACAAGACTGGTTTGATCGGACCAGGACTGTTCCATGGCCTTGTATCTG CTTCGTCAGTTGCAGGGAGCAGCATAGACACCAACCATTCATATTCTGGAGTCAGTGCTGTCTCGGACTCCATTGATTCCCTAGAAAAGCCAGCAAAAAG ACAACATCTGATACCAGCACAAGTACTGGTTCCTCTTTCAATGAAGGTCTCTTCGTCTTGTACAGGTTTTATGAATACTGAGAACCTAGAGGAAGGTACA AATGGCTATGGTGCCAGCAATGGTGGGATAAAGGGTTGTGATTATCTGGTTCCCGAGGGAAGAGTCCATGGCGGCGCCCTTATGTCATTGTTCGGTGGAA ATCTGAAGAATTCAATCGATGGAGTTTGA
AA sequence Show only first row Show all	>Potri.001G206600.1 pacid=42790959 polypeptide=Potri.001G206600.1.p locus=Potri.001G206600 ID=Potri.001G206600.1.v4.1 annot-version=v4.1 MNLIKKGPRFSHNNELPKNDCFGDTALSLNCLGYGGSSSTNAEGADNNLKVDFSNASDDGCKLVLGLGPTPSAYFDDCYSFGVNKNKGLASGAIFPKGLL SESDSILKLGLSGGAKEALSGLGCAIEGTDTDTPMLNQISGDDIRVPIPVVDEGSTSAKKSGGYIASLLLAPRMDVGKALSQTELLNFGTGSHHQFQLSH ELPANADFSVGTTSEQAISSTSSDHRTKIPKKCKFFGCSKGARGASGLCIGHGGGQRCHKPGCNKGAESRTAYCKAHGGGRRCQHLGCTKSAEGKTENCI AHGGGRRCGFPGGCAKAARGKSGLCIRHGGGKRCKVEGCTRSAEGQAGLCISHGGGRRCLHQACTKGAQGSTMFCKAHGGGRRCIFAGCSKGAEGSTPLC KGHGGGKRCLFDGGGICPKSVHGGTDFCVAHGGGKRCVVPGCTKSARGRTDCCVRHGGGKRCKFEDCGKSAQGSTDFCKAHGGGKRCTWGEGKCEKFARG KSGLCAAHSSMVQERKANKTGLIGPGLFHGLVSASSVAGSSIDTNHSYSGVSAVSDSIDSLEKPAKRQHLIPAQVLVPLSMKVSSSCTGFMNTENLEEGT NGYGASNGGIKGCDYLVPEGRVHGGALMSLFGGNLKNSIDGV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64550			loricrin-related (.1)		Potri.001G206600 [exp]	0	1
AT3G14830			unknown protein		Potri.003G026500 [exp]	2.00	0.7818
AT3G63500			Protein of unknown function (D...		Potri.009G059000 [exp]	8.06	0.7840
AT4G03430		EMB2770, STA1	STABILIZED 1, EMBRYO DEFECTIVE...		Potri.013G135300 [exp]	10.77	0.7788
AT1G46768	AP2_ERF	RAP2.1	related to AP2 1 (.1)		Potri.002G124000 [exp]	11.61	0.6943	Pt-DREB1.3,DREB35
AT5G57710			Double Clp-N motif-containing ...		Potri.006G175200 [exp]	12.96	0.7252
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Potri.014G051500 [exp]	14.42	0.7523
AT4G32620			Enhancer of polycomb-like tran...		Potri.018G034900 [exp]	14.96	0.7622
AT2G17030			F-box family protein with a do...		Potri.004G179685 [exp]	15.58	0.7254
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Potri.006G187400 [exp]	16.24	0.7811
AT4G02720			unknown protein		Potri.005G210900 [exp]	19.23	0.7714

Compare expression of checked genes

Potri.001G206600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.