Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33430 927 / 0 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT2G13790 848 / 0 BAK7, BKK1, ATSERK4 BAK1-LIKE 1, BRI1- ASSOCIATED KINASE 7, somatic embryogenesis receptor-like kinase 4 (.1) AT2G13800 790 / 0 BAK8, ATSERK5 BRI1- ASSOCIATED KINASE 8, SOMATIC EMBRYOGENESIS RECEPTOR LIKE KINASE 5, somatic embryogenesis receptor-like kinase 5 (.1) AT1G34210 664 / 0 ATSERK2, SERK2 somatic embryogenesis receptor-like kinase 2 (.1) AT1G71830 654 / 0 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT2G23950 498 / 8e-170 Leucine-rich repeat protein kinase family protein (.1) AT4G30520 496 / 6e-169 SARK SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE, Leucine-rich repeat protein kinase family protein (.1) AT5G65240 474 / 3e-161 Leucine-rich repeat protein kinase family protein (.1.2) AT5G63710 467 / 4e-158 Leucine-rich repeat protein kinase family protein (.1) AT5G10290 466 / 5e-158 leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G023000 [exp] 973 / 0 AT4G33430 961 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Potri.019G087700 [exp] 666 / 0 AT1G34210 1012 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.013G117200 [exp] 663 / 0 AT1G34210 1013 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.007G082400 [exp] 652 / 0 AT1G34210 954 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.005G083300 [exp] 650 / 0 AT1G71830 981 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Potri.006G179400 [exp] 517 / 2e-177 AT2G23950 889 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G101300 [exp] 501 / 4e-171 AT4G30520 837 / 0.0 SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE, Leucine-rich repeat protein kinase family protein (.1) Potri.010G043200 [exp] 483 / 3e-164 AT1G60800 925 / 0.0 NSP-interacting kinase 3 (.1) Potri.017G108000 [exp] 481 / 2e-163 AT5G16000 995 / 0.0 NSP-interacting kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020962 [exp] 970 / 0 AT4G33430 989 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Lus10006057 [exp] 670 / 0 AT1G71830 954 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10028716 [exp] 667 / 0 AT1G71830 1000 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10025358 [exp] 532 / 0 AT4G33430 500 / 2e-176 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Lus10028715 [exp] 513 / 1e-176 AT1G71830 748 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10006056 [exp] 511 / 1e-175 AT1G71830 731 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10023146 [exp] 471 / 1e-162 AT5G10290 680 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10000629 [exp] 471 / 1e-159 AT5G10290 914 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10030898 [exp] 468 / 3e-158 AT1G60800 931 / 0.0 NSP-interacting kinase 3 (.1) Lus10030591 [exp] 467 / 5e-158 AT1G60800 929 / 0.0 NSP-interacting kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G206700.1 pacid=42789279 polypeptide=Potri.001G206700.1.p locus=Potri.001G206700 ID=Potri.001G206700.1.v4.1 annot-version=v4.1 ATGTGGGCGATCTGGACCTCTGCTTTCTTTTTGGTCTTTCATTTGGTCGTCGTCAGGGTCTCCAGTAATGTAGAAGGCGATGCCTTGAATGCATTAAAGA CGAATTTACTTGATCCGAACAATGTTCTTCAAAGTTGGGATGCTACTCTCGTCAATCCCTGCACTTGGTTTCATGTTACATGCAATAATGAAAATAGTGT CACGCGTGTTGATCTTGGAAATGCAAATCTATCTGGTCAACTGGTTACGCAACTTGGGGTGCTTTCAAATTTGCAGTACTTGGAACTTTACAGCAATAAC ATAACTGGACAAATTCCAGCTGAGCTTGGGAATCTGACAAACTTGGTGAGCTTGGATCTTTACTTGAACAACTTAACTGGTCCGATTCCTCAGACATTGG GCAAGCTTCAGAAACTACGTTTCTTGCGTCTCAACAACAACACCTTGTCGGGAACGATTCCTGTGAATTTAACTACGGTTACTACCTTGCAAGTCCTGGA TCTTTCTAACAACCAACTAACAGGAGATGTCCCTGTAAATGGCTCATTCTCTTTTTTCACTCCTATCAGTTTTGCCAACAATAAACTCAATGCTTCTCAA GCTCCTCCACCACCTCCTCTTTCTCCACCATCAAGGGGTCCTTCTAATGGAAATAGTGCCACTGGAGCTATTGCTGGGGGAGTTGCTGCTGGTGCTGCTC TTCTGTTTGCTGCCCCTGCAATGGTACTTGCTTATTGGCGAAAAAGAAAACCACAGGACCACTTCTTTGATGTACCTGCTGAAGAGGACCCAGAAGTTCA TCTTGGACAGCTTAAAAGGTTTTCTCTGCGTGAGCTACAAGTTGCAACTGACAATTTTAGTCACAAAAACATTTTGGGCAGGGGTGGGTTCGGAAAGGTT TATAAAGGACGTTTAACTGATGGTTCTCTAGTGGCTGTTAAAAGACTGAAAGAGGAGCGCACCCAGGGTGGGGAACTGCAGTTCCAGACAGAAGTTGAGA TGATCAGCATGGCTGTGCATCGGAACTTGCTTCGTCTACGTGGCTTTTGCATGACTCCAACTGAGAGGTTGCTTGTCTATCCTTATATGGCTAATGGAAG TGTAGCATCATGTTTAAGAGAGCGTTCAGAATCACAATCCCCACTTGAATGGCCAATAAGGAAGCAAATTGCATTAGGATCCGCACGAGGGTTGGCTTAT TTGCACGATCATTGTGATCCTAAGATTATTCACCGCGATGTGAAAGCCGCAAATATTTTGTTAGATGAGGAATTTGAAGCAGTTGTTGGAGATTTTGGGT TGGCAAAACTCATGGACTACAAAGATACTCATGTTACTACTGCAGTACGTGGCACAATTGGGCATATAGCACCTGAATACCTATCAACAGGAAAGTCTTC AGAGAAGACTGATGTTTTTGGGTATGGTGTCATGCTTCTTGAACTTATCACTGGACAGAGGGCTTTTGATCTTGCTCGGCTTGCAAATGACGATGATGTA ATGTTACTTGATTGGGTGAAGGGACTTCTAAAAGATAAGAAGTTGGAGATGCTGGTTGATGCTGATCTGACGGGAAATTACATCGATGATGAGGTTGAGA ATCTGATCCAAGTGGCTCTACTGTGCACACAAAGCTCCCCAATGGAACGACCAAAGATGTCAGAAGTGGTCAGAATGCTGGAAGGGGATGGCTTGGCGGA GAGATGGGAGGAATGGCAGAAAGAGGAGGTGTTCCGCCAAGAGTTTAACCACACTCATCACGCACACACTAATTGGATCGTTGATTCTTCATCCCACATC CCTCCAGATGAATTGTCTGGACCAAGATGA
AA sequence Show only first row Show all	>Potri.001G206700.1 pacid=42789279 polypeptide=Potri.001G206700.1.p locus=Potri.001G206700 ID=Potri.001G206700.1.v4.1 annot-version=v4.1 MWAIWTSAFFLVFHLVVVRVSSNVEGDALNALKTNLLDPNNVLQSWDATLVNPCTWFHVTCNNENSVTRVDLGNANLSGQLVTQLGVLSNLQYLELYSNN ITGQIPAELGNLTNLVSLDLYLNNLTGPIPQTLGKLQKLRFLRLNNNTLSGTIPVNLTTVTTLQVLDLSNNQLTGDVPVNGSFSFFTPISFANNKLNASQ APPPPPLSPPSRGPSNGNSATGAIAGGVAAGAALLFAAPAMVLAYWRKRKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSHKNILGRGGFGKV YKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERSESQSPLEWPIRKQIALGSARGLAY LHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDV MLLDWVKGLLKDKKLEMLVDADLTGNYIDDEVENLIQVALLCTQSSPMERPKMSEVVRMLEGDGLAERWEEWQKEEVFRQEFNHTHHAHTNWIVDSSSHI PPDELSGPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Potri.001G206700 [exp]	0	1
AT5G43100			Eukaryotic aspartyl protease f...		Potri.014G020200 [exp]	1.41	0.7453
AT4G30600			signal recognition particle re...		Potri.018G105900 [exp]	5.29	0.7107
AT5G01960			RING/U-box superfamily protein...		Potri.016G141200 [exp]	6.00	0.6691
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Potri.001G241600 [exp]	8.83	0.7001
AT3G58630	Trihelix		sequence-specific DNA binding ...		Potri.003G118600 [exp]	11.22	0.6580
AT1G23710			Protein of unknown function (D...		Potri.015G076400 [exp]	12.72	0.6760
AT4G33890			unknown protein		Potri.009G090400 [exp]	16.30	0.6815
AT2G27580			A20/AN1-like zinc finger famil...		Potri.009G144100 [exp]	18.84	0.7042
AT2G27580			A20/AN1-like zinc finger famil...		Potri.004G184300 [exp]	21.35	0.6432
AT1G46768	AP2_ERF	RAP2.1	related to AP2 1 (.1)		Potri.002G124000 [exp]	25.92	0.6340	Pt-DREB1.3,DREB35

Compare expression of checked genes

Potri.001G206700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.