Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	XYL4.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64570 1169 / 0 ATBXL4, XYL4 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) AT5G09730 1090 / 0 ATBXL3, XYL3, BXL3, ATBX3 beta-xylosidase 3 (.1) AT3G19620 853 / 0 Glycosyl hydrolase family protein (.1) AT5G49360 832 / 0 ATBXL1, BXL1 beta-xylosidase 1 (.1) AT1G02640 827 / 0 ATBXL2, BXL2 beta-xylosidase 2 (.1) AT5G10560 723 / 0 Glycosyl hydrolase family protein (.1) AT1G78060 704 / 0 Glycosyl hydrolase family protein (.1) AT5G09700 647 / 0 Glycosyl hydrolase family protein (.1) AT5G20950 118 / 3e-27 Glycosyl hydrolase family protein (.1.2) AT3G47000 117 / 3e-27 Glycosyl hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G022900 [exp] 1346 / 0 AT5G64570 1138 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) Potri.002G197200 [exp] 902 / 0 AT1G02640 1189 / 0.0 beta-xylosidase 2 (.1) Potri.014G122200 [exp] 884 / 0 AT1G02640 1154 / 0.0 beta-xylosidase 2 (.1) Potri.010G141400 [exp] 883 / 0 AT5G49360 1113 / 0.0 beta-xylosidase 1 (.1) Potri.008G108100 [exp] 855 / 0 AT5G49360 1104 / 0.0 beta-xylosidase 1 (.1) Potri.001G294700 [exp] 820 / 0 AT3G19620 1080 / 0.0 Glycosyl hydrolase family protein (.1) Potri.002G094000 [exp] 756 / 0 AT1G78060 1077 / 0.0 Glycosyl hydrolase family protein (.1) Potri.005G168500 [exp] 753 / 0 AT1G78060 1069 / 0.0 Glycosyl hydrolase family protein (.1) Potri.007G114300 [exp] 739 / 0 AT3G19620 776 / 0.0 Glycosyl hydrolase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020966 [exp] 1212 / 0 AT5G64570 1181 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) Lus10010015 [exp] 841 / 0 AT1G02640 1148 / 0.0 beta-xylosidase 2 (.1) Lus10022374 [exp] 749 / 0 AT1G78060 1065 / 0.0 Glycosyl hydrolase family protein (.1) Lus10019099 [exp] 739 / 0 AT1G78060 1007 / 0.0 Glycosyl hydrolase family protein (.1) Lus10016858 [exp] 738 / 0 AT5G49360 922 / 0.0 beta-xylosidase 1 (.1) Lus10004271 [exp] 709 / 0 AT5G10560 989 / 0.0 Glycosyl hydrolase family protein (.1) Lus10007775 [exp] 496 / 3e-168 AT1G78060 725 / 0.0 Glycosyl hydrolase family protein (.1) Lus10019240 [exp] 254 / 2e-75 AT5G10560 407 / 1e-133 Glycosyl hydrolase family protein (.1) Lus10037728 [exp] 160 / 1e-45 AT5G49360 177 / 1e-52 beta-xylosidase 1 (.1) Lus10010657 [exp] 130 / 3e-31 AT5G20950 889 / 0.0 Glycosyl hydrolase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00933 [poplar] [flax] Glyco_hydro_3 Glycosyl hydrolase family 3 N terminal domain CL0058 [poplar] [flax] PF01915 [poplar] [flax] Glyco_hydro_3_C Glycosyl hydrolase family 3 C-terminal domain CL0159 [poplar] [flax] E-set PF14310 [poplar] [flax] Fn3-like Fibronectin type III-like domain
Representative CDS sequence Show only first row Show all	>Potri.001G206800.2 pacid=42791001 polypeptide=Potri.001G206800.2.p locus=Potri.001G206800 ID=Potri.001G206800.2.v4.1 annot-version=v4.1 ATGGCCTCATTTTGTTCCCAAAACAGAGTACCTAAGGTCTCTGTTTTTCTCTTCTTTTCCCTTGTCTGCTTCTTACTTTTTTCTTCTAGCCATGTAGTTT TGGCACAATCATCACCAGTTTTTGCCTGTGATGTTGTGAGCAATCCATCCTTGGCCAGTTTTGGGTTCTGTAACACGTCGTTAGGGGTGAGTGACAGAGT TGTAGACCTGGTGAAAAGACTCACATTGCAAGAAAAGATATTGTTCTTGGTGAATAGTGCAGGGAGTGTGAGCAGACTTGGGATACCTAAATATGAATGG TGGTCGGAGGCTTTACATGGAGTTTCTTACGTCGGTCCAGGCACTCATTTCTCTAGTGTTGTCCCCGGAGCTACAAGCTTTCCTCAGGTCATCCTCACTG CTGCTTCCTTCAACACCTCTCTCTTTGTAGCCATTGGAAAGGTTGTTTCAACGGAAGCAAGAGCAATGTACAATGTGGGATTGGCAGGATTGACGTTTTG GTCACCAAATATCAACATATTTCGAGACCCCAGATGGGGAAGAGGCCAGGAAACTCCAGGAGAGGACCCCTTGCTCTCAAGTAAATATGGATCAGGCTAT GTTAAAGGACTGCAACAAAGGGATGATGGCAATCCAGATGGACTTAAGGTTGCTGCATGCTGTAAACATTACACAGCCTATGATTTGGATAACTGGAAAG GGGTTGATCGTTACCATTTTAATGCTGTGGTGACAAAGCAAGATATGGATGATACGTTTCAACCACCTTTCAAAAGTTGTGTTGTTGATGGGAATGTTGC TAGTGTCATGTGTTCTTACAACAAGGTTAATGGTATACCCACCTGTGCTGATCCCGACCTCCTCTCTGGTGTAATCCGAGGGGAATGGAAATTAAATGGG TACATTGTTACCGATTGTGATTCCATAGACGTGTTCTACAACTCCCAGCATTATACCAAAACACCAGAAGAAGCTGCAGCCAAAGCTATATTGGCAGGGT TGGACCTCAACTGTGGATCTTTCTTGGGAAAACACACTGAAGCAGCAGTAACAGCAGGACTTGTGAATGAGTCGGCCATTGATAGAGCTGTCTTCAACAA TTTTGCCACTTTAATGCGACTTGGATTCTTTGATGGTGATCCCAGCAAACAACTCTATGGGAAGCTAGGACCAAAAGATGTATGTACAGCAGAGAATCAG GAGCTGGCCCGTGAAGCTGCCAGGCAAGGGATTGTGTTGCTTAAGAACACCGCAGGATCACTTCCTCTATCTCCCACTGCCATAAAAAACCTGGCAGTAA TTGGACCAAATGCCAATGTCACTAAAACAATGATTGGAAACTATGAAGGTACACCCTGCAAATATACAACCCCTTTACAAGGACTAGCAGCTTTGGTTGC AACAACATATCTACCTGGCTGCTCAAACGTAGCCTGCAGCACTGCCCAAGTAGATGATGCCAAGAAAATAGCAGCTGCAGCTGATGCCACGGTGCTTGTA ATGGGTGCCGATCTATCTATAGAAGCAGAGAGTCGTGACAGGGTGGACATTCTCCTTCCAGGGCAGCAGCAGCTTCTGATAACAGCAGTTGCAAATGCAT CCACTGGACCTGTAATCCTTGTTATAATGTCTGGGGGAGGCATGGATGTATCATTTGCGAAAACTAACGACAAAATCACAAGTATCCTATGGGTTGGCTA CCCTGGCGAAGCTGGTGGAGCTGCCATAGCTGATATTATTTTTGGTTCCTACAACCCAAGTGGGAGGCTACCGATGACTTGGTATCCACAATCATACGTA GACAAAGTACCAATGACAAATATGAACATGAGACCAGATCCCTCCAATGGCTATCCTGGCAGAACCTACAGGTTCTACACCGGAGAAACTGTTTACTCAT TTGGAGATGGACTAAGCTATTCTGAATTCAGCCACGAACTAACTCAAGCACCTGGACTAGTATCTGTTCCTTTAGAGGAAAATCATGTCTGTTACTCTTC AGAATGCAAATCAGTTGCTGCTGCTGAACAGACTTGTCAGAACTTAACCTTTGATGTGCATTTGAGAATCAAGAACACGGGAACAACGAGCGGAAGCCAT ACAGTTTTCTTGTTCTCTACTCCCCCATCAGTGCACAACTCACCACAGAAGCATTTGGTGGGTTTTGAGAAGGTCTTCCTGCATGCACAAACAGATAGCC ATGTGGGATTCAAGGTGGATGTTTGTAAGGATTTGAGTGTGGTTGATGAGCTCGGAAGCAAGAAAGTTGCCTTGGGAGAACACGTTCTTCATATTGGAAG CTTGAAGCACTCCATGACTGTAAGGATTTGA
AA sequence Show only first row Show all	>Potri.001G206800.2 pacid=42791001 polypeptide=Potri.001G206800.2.p locus=Potri.001G206800 ID=Potri.001G206800.2.v4.1 annot-version=v4.1 MASFCSQNRVPKVSVFLFFSLVCFLLFSSSHVVLAQSSPVFACDVVSNPSLASFGFCNTSLGVSDRVVDLVKRLTLQEKILFLVNSAGSVSRLGIPKYEW WSEALHGVSYVGPGTHFSSVVPGATSFPQVILTAASFNTSLFVAIGKVVSTEARAMYNVGLAGLTFWSPNINIFRDPRWGRGQETPGEDPLLSSKYGSGY VKGLQQRDDGNPDGLKVAACCKHYTAYDLDNWKGVDRYHFNAVVTKQDMDDTFQPPFKSCVVDGNVASVMCSYNKVNGIPTCADPDLLSGVIRGEWKLNG YIVTDCDSIDVFYNSQHYTKTPEEAAAKAILAGLDLNCGSFLGKHTEAAVTAGLVNESAIDRAVFNNFATLMRLGFFDGDPSKQLYGKLGPKDVCTAENQ ELAREAARQGIVLLKNTAGSLPLSPTAIKNLAVIGPNANVTKTMIGNYEGTPCKYTTPLQGLAALVATTYLPGCSNVACSTAQVDDAKKIAAAADATVLV MGADLSIEAESRDRVDILLPGQQQLLITAVANASTGPVILVIMSGGGMDVSFAKTNDKITSILWVGYPGEAGGAAIADIIFGSYNPSGRLPMTWYPQSYV DKVPMTNMNMRPDPSNGYPGRTYRFYTGETVYSFGDGLSYSEFSHELTQAPGLVSVPLEENHVCYSSECKSVAAAEQTCQNLTFDVHLRIKNTGTTSGSH TVFLFSTPPSVHNSPQKHLVGFEKVFLHAQTDSHVGFKVDVCKDLSVVDELGSKKVALGEHVLHIGSLKHSMTVRI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64570		ATBXL4, XYL4	ARABIDOPSIS THALIANA BETA-D-XY...		Potri.001G206800 [exp]	0	1	XYL4.2
AT3G05520			Subunits of heterodimeric acti...		Potri.005G025300 [exp]	1.73	0.9184
AT1G09210		AtCRT1b	calreticulin 1b (.1)		Potri.013G009500 [exp]	2.44	0.9005
AT3G18295			Protein of unknown function (D...		Potri.012G055200 [exp]	4.24	0.8349
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Potri.006G063000 [exp]	4.24	0.9039	AVP.5
AT2G27690		CYP94C1	"cytochrome P450, family 94, s...		Potri.010G236700 [exp]	4.47	0.8742
AT3G16060			ATP binding microtubule motor ...		Potri.001G182300 [exp]	5.47	0.8730
AT2G03550			alpha/beta-Hydrolases superfam...		Potri.004G142400 [exp]	5.56	0.8151
AT1G22760		PAB3	poly(A) binding protein 3 (.1)		Potri.005G198500 [exp]	11.22	0.8688
AT4G26510		UKL4	uridine kinase-like 4 (.1.2)		Potri.011G165100 [exp]	11.66	0.8630
AT1G72480			Lung seven transmembrane recep...		Potri.003G068500 [exp]	11.83	0.8379

Compare expression of checked genes

Potri.001G206800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.