Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26410 696 / 0 TRM11, AtTRM11 tRNA modification 11, methyltransferases;nucleic acid binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G022650 [exp] 160 / 8e-48 AT3G26410 134 / 1e-38 tRNA modification 11, methyltransferases;nucleic acid binding (.1) Potri.003G022701 [exp] 134 / 3e-38 AT3G26410 93 / 6e-24 tRNA modification 11, methyltransferases;nucleic acid binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018149 [exp] 729 / 0 AT3G26410 731 / 0.0 tRNA modification 11, methyltransferases;nucleic acid binding (.1) Lus10025686 [exp] 530 / 0 AT3G26410 540 / 0.0 tRNA modification 11, methyltransferases;nucleic acid binding (.1) Lus10018147 [exp] 234 / 7e-73 AT3G26410 206 / 2e-62 tRNA modification 11, methyltransferases;nucleic acid binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01170 [poplar] [flax] UPF0020 Putative RNA methylase family UPF0020
Representative CDS sequence Show only first row Show all	>Potri.001G207000.1 pacid=42790467 polypeptide=Potri.001G207000.1.p locus=Potri.001G207000 ID=Potri.001G207000.1.v4.1 annot-version=v4.1 ATGTGGTATCTGTGCGTGTTTTACCACAGATTGCTAAGTTACAGAAGGGCAGAAGTGGAGTCTCTGGCAGAAATGTTTGGGGTTTTTTCGAGTTTGGAAT GGAGGCTTCCAGAAAATCAGCATCCGGACTCTCCTTTCCATTTGGTCAATCTTCCTTCAGAAGATATCGCTCGAAACATTGCCAATCGAAGCATACTTGT CAAAGGAATCTATGAACTTTGGGGAGAAGGAAGTAGCTTTGAGCAACTTGAAGAGGCTATAAAGAGTTATCCGGAAGACCGAAAATTGCCTTACTTGACT TGTGAAACTACTTTCAAGGTCACTGTTGACAGCTTTGGAAAGGCAATCAGCTTCCAGGAACAGAATGACCGTATCAAGAGTCTTGCCTACATCCCTTTCA AGGGCCGAGTTAATTTAAAAAACCCAGATATCAACTTCTGGCTCATAGAAACTGATGACTATGGAGCTCCCAATGGGCTTCCACCGGTTGTCCAAAAAAG AATCTTTTTTGGTCGACTGGTTGGTGGTGCTGACAGGAAGCTCTTACCAACTTATCAGTTGAAAAGCCGTAGATATCTGGGCCCAACTGCCATGGACGCA GAGATGGCTTTCTTGATGGCTAACCAAGCACTGGTCATGCCAGGGAAACTCGTTTACGATCCTTTTGTTGGAACTGGCAGCATTCTTGTTGCTGCAGCTC ACTTTGGGGCAATGACCATGGGTGCTGACATTGATATTAGGGCTGTACGTGATGGTCGTGGACCTGACTGTAATGTTTGGAGCAATTTTAAGCAGTACGG ATTACCCTTGCCAGTTGCTCTTTTAAGGGCAGATAATAATCTTCCTCCTTGGCGATCTGGATTAAAAGAGATTTTTGATGCCATAATCTGTGACCCGCCT TATGGGGTTCGTGCTGGGGGACGCAAGTCTGGTGGCCGGAAATTGCTCAAGGGAATTGTGGGCCCTTACACTGTTCCTGATGATAAGAGAACTGACCACA TTCCCTCAACTGCACCTTACAGCTTAGCTGAGTGTGTGCATGACTTACTTGACCTTGCTGCTAGGATGCTAGTAATGGGTGGCAGGCTTGTATACTTTTA CCCTGTATTGAGAGAAGATGATGTTATGGAAAATCACTTTCCAGAGCACCCATGTTTCAAATTGATTGCATCTTCTGAACAGATTTTAAGTTCCCGTTAC AGCCGGGTATTAGTAACCATGGTGAAGACAGGTTCATACACCGACAAAGTGGCTGAGGCAGCCAAGATCAAGCATCAGGAGTTCAAGGAGAATTATGTGA AGTGGTTAGAACATGGTAATCTCCATTCTTCTGTTTTCGGTCCAGCTCATCTGCATTTAGGTGAAGAAACTGATTCTAAATTATGTAAAGAACTGAAACC GAAGTACAGAGGAAAATATGTATGA
AA sequence Show only first row Show all	>Potri.001G207000.1 pacid=42790467 polypeptide=Potri.001G207000.1.p locus=Potri.001G207000 ID=Potri.001G207000.1.v4.1 annot-version=v4.1 MWYLCVFYHRLLSYRRAEVESLAEMFGVFSSLEWRLPENQHPDSPFHLVNLPSEDIARNIANRSILVKGIYELWGEGSSFEQLEEAIKSYPEDRKLPYLT CETTFKVTVDSFGKAISFQEQNDRIKSLAYIPFKGRVNLKNPDINFWLIETDDYGAPNGLPPVVQKRIFFGRLVGGADRKLLPTYQLKSRRYLGPTAMDA EMAFLMANQALVMPGKLVYDPFVGTGSILVAAAHFGAMTMGADIDIRAVRDGRGPDCNVWSNFKQYGLPLPVALLRADNNLPPWRSGLKEIFDAIICDPP YGVRAGGRKSGGRKLLKGIVGPYTVPDDKRTDHIPSTAPYSLAECVHDLLDLAARMLVMGGRLVYFYPVLREDDVMENHFPEHPCFKLIASSEQILSSRY SRVLVTMVKTGSYTDKVAEAAKIKHQEFKENYVKWLEHGNLHSSVFGPAHLHLGEETDSKLCKELKPKYRGKYV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26410		TRM11, AtTRM11	tRNA modification 11, methyltr...		Potri.001G207000 [exp]	0	1
AT2G43770			Transducin/WD40 repeat-like su...		Potri.019G096900 [exp]	1.41	0.9475
AT2G30280		RDM4, DMS4	DEFECTIVE IN MERISTEM SILENCIN...		Potri.019G126500 [exp]	2.44	0.9198
AT3G58610			ketol-acid reductoisomerase (....		Potri.011G052700 [exp]	3.31	0.8616
AT1G51200			A20/AN1-like zinc finger famil...		Potri.003G205500 [exp]	3.46	0.9138
AT5G51940		NRPE6A, NRPD6A,...	RNA polymerase Rpb6 (.1)		Potri.012G136900 [exp]	3.46	0.9197
AT5G56780		ATET2	ARABIDOPSIS EFFECTOR OF TRANSC...		Potri.006G150000 [exp]	3.87	0.9043
AT1G11710			Pentatricopeptide repeat (PPR)...		Potri.011G003700 [exp]	4.24	0.8629
AT1G12580		PEPKR1	phosphoenolpyruvate carboxylas...		Potri.012G134600 [exp]	4.58	0.8723	Pt-CDPK5.3
AT4G36240	GATA	GATA7	GATA transcription factor 7 (....		Potri.005G066100 [exp]	6.00	0.8608
AT1G62280		SLAH1	SLAC1 homologue 1 (.1)		Potri.010G170050 [exp]	6.48	0.8598

Compare expression of checked genes

Potri.001G207000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.