Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26420 175 / 6e-55 ATRZ-1A RZ-1A, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) AT2G21660 117 / 4e-33 CCR2, ATGRP7, GR-RBP7 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) AT4G39260 114 / 9e-33 ATGRP8, CCR1, GR-RBP8 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) AT1G60650 99 / 6e-25 AtRZ-1b AtRZ-1b, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) AT5G04280 97 / 3e-24 AtRZ-1c AtRZ-1c, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) AT4G13850 85 / 9e-21 ATGRP2, GR-RBP2 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) AT5G06210 82 / 7e-20 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT3G23830 81 / 2e-19 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT2G37220 82 / 9e-19 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G53460 80 / 1e-17 CP29 chloroplast RNA-binding protein 29 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G155300 [exp] 121 / 7e-35 AT2G21660 145 / 3e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.009G116400 [exp] 120 / 3e-34 AT2G21660 145 / 5e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.010G228700 [exp] 105 / 2e-27 AT5G04280 172 / 7e-52 AtRZ-1c, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) Potri.008G033000 [exp] 105 / 2e-27 AT1G60650 172 / 3e-52 AtRZ-1b, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) Potri.017G059000 [exp] 87 / 1e-21 AT4G13850 134 / 9e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.015G057400 [exp] 88 / 4e-21 AT5G61030 157 / 8e-47 glycine-rich RNA-binding protein 3 (.1) Potri.001G319900 [exp] 82 / 9e-20 AT4G13850 140 / 1e-43 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.012G061600 [exp] 84 / 2e-19 AT5G61030 181 / 9e-56 glycine-rich RNA-binding protein 3 (.1) Potri.001G340800 [exp] 84 / 2e-19 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023569 [exp] 118 / 2e-33 AT2G21660 147 / 8e-46 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10020953 [exp] 119 / 4e-33 AT3G26420 170 / 1e-52 RZ-1A, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) Lus10040454 [exp] 118 / 7e-33 AT2G21660 148 / 3e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10026344 [exp] 111 / 4e-31 AT2G21660 140 / 3e-44 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10042320 [exp] 111 / 4e-31 AT2G21660 140 / 3e-44 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10026343 [exp] 110 / 3e-30 AT4G39260 145 / 1e-45 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) Lus10042321 [exp] 100 / 2e-26 AT2G21660 121 / 2e-36 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10022551 [exp] 91 / 3e-23 AT4G13850 167 / 7e-54 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10016639 [exp] 91 / 3e-23 AT4G13850 166 / 1e-53 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10023758 [exp] 86 / 6e-21 AT2G37510 164 / 9e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0511 [poplar] [flax] Retroviral_zf PF00098 [poplar] [flax] zf-CCHC Zinc knuckle
Representative CDS sequence Show only first row Show all	>Potri.001G207100.1 pacid=42789840 polypeptide=Potri.001G207100.1.p locus=Potri.001G207100 ID=Potri.001G207100.1.v4.1 annot-version=v4.1 ATGTCAGAAGAGTTAGAGTACCGCTGTTTTATTGGCGGCCTTTCATGGTCTACTTCTGATAGAGGTTTAAAGGAGACTTTTGAAAAGTTTGGCCATCTTC TTGAAGCTAAGGTAGTGGTTGATAAGTTCAGTGGACGCTCTCGTGGATTTGGGTTTGTCACTTTTGATGAGAAGAAAGCAATGGAAGATGCTATTGAAGG GATGAATGGAATGGATTTAGATGGCCGAACCATCACTGTTGATAAAGCCCAGCCTCAGCAAGGTTCAAGCAGGGATCTTGATGGTGATCGCAGCCGTGAT AGGGACCGGGACCGTGACCGTGGGCATGATCGTGATAGGAATCGTGACTATGGAGGTGGGCGTGGATCTAACAGTGGAGAGTGCTTTAAGTGTGGCAAGC CTGGGCATTTTGCTAGGGAGTGTCCAAGTGAAGGGGCAAGAGGTGGCAGGTATGGTGGCAGAGATGAGAGGTATTCTGGCGGCGGCGGCAGTAGTGGTGG TAGTCGCTATGGCCCTGATCGGAATGGAGATCGATCTGGTGGGCGTAATAGGGATGGTGGTAGTCGTGGAGGTCCTGGAGGTGATCGATATAATCGTGAC CGTTCAGGACCCTATGAGCGTCGTACTTCAGGGTTTCGTTCAGGATAG
AA sequence Show only first row Show all	>Potri.001G207100.1 pacid=42789840 polypeptide=Potri.001G207100.1.p locus=Potri.001G207100 ID=Potri.001G207100.1.v4.1 annot-version=v4.1 MSEELEYRCFIGGLSWSTSDRGLKETFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKAMEDAIEGMNGMDLDGRTITVDKAQPQQGSSRDLDGDRSRD RDRDRDRGHDRDRNRDYGGGRGSNSGECFKCGKPGHFARECPSEGARGGRYGGRDERYSGGGGSSGGSRYGPDRNGDRSGGRNRDGGSRGGPGGDRYNRD RSGPYERRTSGFRSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26420		ATRZ-1A	RZ-1A, RNA-binding (RRM/RBD/RN...		Potri.001G207100 [exp]	0	1
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Potri.016G017500 [exp]	4.69	0.7054
AT1G09660			RNA-binding KH domain-containi...		Potri.004G225900 [exp]	6.32	0.6651
AT5G54540			Uncharacterised conserved prot...		Potri.011G130000 [exp]	10.24	0.6525
AT3G05700			Drought-responsive family prot...		Potri.005G020900 [exp]	10.67	0.6967
AT1G60900			U2 snRNP auxilliary factor, la...		Potri.004G040900 [exp]	12.04	0.6041
AT5G14680			Adenine nucleotide alpha hydro...		Potri.017G071700 [exp]	13.11	0.7058
AT1G68490			unknown protein		Potri.015G047100 [exp]	14.69	0.6505
AT4G19150			Ankyrin repeat family protein ...		Potri.001G130500 [exp]	16.58	0.6319
AT1G21760		ATFBP7	F-box protein 7 (.1)		Potri.005G178600 [exp]	22.09	0.6414
AT5G25360			unknown protein		Potri.006G254000 [exp]	27.49	0.5662

Compare expression of checked genes

Potri.001G207100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.