Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	EMB143.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14110 299 / 2e-104 FUS7, EMB143, CSN8, COP9 FUSCA 7, EMBRYO DEFECTIVE 143, COP9 SIGNALOSOME SUBUNIT 8, CONSTITUTIVE PHOTOMORPHOGENIC 9, COP9 signalosome, subunit CSN8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G022001 [exp] 135 / 1e-41 AT4G14110 111 / 2e-32 FUSCA 7, EMBRYO DEFECTIVE 143, COP9 SIGNALOSOME SUBUNIT 8, CONSTITUTIVE PHOTOMORPHOGENIC 9, COP9 signalosome, subunit CSN8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036164 [exp] 312 / 9e-110 AT4G14110 284 / 7e-99 FUSCA 7, EMBRYO DEFECTIVE 143, COP9 SIGNALOSOME SUBUNIT 8, CONSTITUTIVE PHOTOMORPHOGENIC 9, COP9 signalosome, subunit CSN8 (.1) Lus10005729 [exp] 306 / 2e-107 AT4G14110 275 / 4e-95 FUSCA 7, EMBRYO DEFECTIVE 143, COP9 SIGNALOSOME SUBUNIT 8, CONSTITUTIVE PHOTOMORPHOGENIC 9, COP9 signalosome, subunit CSN8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF10075 [poplar] [flax] CSN8_PSD8_EIF3K CSN8/PSMD8/EIF3K family
Representative CDS sequence Show only first row Show all	>Potri.001G207900.1 pacid=42791461 polypeptide=Potri.001G207900.1.p locus=Potri.001G207900 ID=Potri.001G207900.1.v4.1 annot-version=v4.1 ATGGATTTCAGTCCGCTCACGGACGCCTTAGCTTCCAAATCGTATGGAAAGATCGCTGATATCTGTGATGACCTCATGCTCAAGGGTGCAGCAGAGATGG AGGGGGTTCCGTTTGAGGAGGAGTGGCCTTTTGCTATTCATCTTCTTGCCCATATTTATGTCAATGATACTAACAGCGCCAGATTTCTGTGGAAATCCAT ACCTGCTGCGGTGAAAGAGAGGCAACCAGAAGTTGTTGCAGCTTGGGGAATTGGTCAGAGGTTATGGACGCGTGACTATGCAGCCGTGCATGAGGCTATT CGTGCTTTTGATTGGTCTCAACAAATTCAACCTCTTGTTGCTGCTTTCTCAGAGGTTTACACCAAGAGGATGTTTCAGCTTTTGCTTTCTGCTTATTCAA CTATAAGCATCCAAGATACAGCTCTCTTTCTAGGAATGAATGAAGATGATGCCACAAGTTATGTATTGCAGCAAGGTTGGGTTGTGGATCCTGATTCTCG AATGCTAATTGTGAAAAAGCAGTCTGTTAAAACAGAGCAGAAACTGGATTCCAGTAAACTACAGCGCTTGACAGAGTATGTGTTTCACTTGGAGCATTAA
AA sequence Show only first row Show all	>Potri.001G207900.1 pacid=42791461 polypeptide=Potri.001G207900.1.p locus=Potri.001G207900 ID=Potri.001G207900.1.v4.1 annot-version=v4.1 MDFSPLTDALASKSYGKIADICDDLMLKGAAEMEGVPFEEEWPFAIHLLAHIYVNDTNSARFLWKSIPAAVKERQPEVVAAWGIGQRLWTRDYAAVHEAI RAFDWSQQIQPLVAAFSEVYTKRMFQLLLSAYSTISIQDTALFLGMNEDDATSYVLQQGWVVDPDSRMLIVKKQSVKTEQKLDSSKLQRLTEYVFHLEH

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14110		FUS7, EMB143, C...	FUSCA 7, EMBRYO DEFECTIVE 143,...		Potri.001G207900 [exp]	0	1	EMB143.2
AT4G26410			Uncharacterised conserved prot...		Potri.001G001300 [exp]	2.44	0.7749
AT5G16060			Cytochrome c oxidase biogenesi...		Potri.017G113401 [exp]	4.35	0.7794
AT5G14105			unknown protein		Potri.017G066388 [exp]	5.00	0.7698
AT1G61700			RNA polymerases N / 8 kDa subu...		Potri.003G102900 [exp]	6.16	0.7321
AT2G39500			unknown protein		Potri.008G051100 [exp]	8.24	0.7389
AT5G52370			unknown protein		Potri.001G246800 [exp]	8.83	0.7768
AT4G25315			Expressed protein (.1.2)		Potri.004G189300 [exp]	9.16	0.7736
AT3G62810			complex 1 family protein / LVR...		Potri.014G129800 [exp]	12.96	0.7656
AT4G35490		MRPL11	mitochondrial ribosomal protei...		Potri.007G058600 [exp]	15.09	0.7671
AT3G06040			Ribosomal protein L12/ ATP-dep...		Potri.015G077200 [exp]	16.12	0.7585

Compare expression of checked genes

Potri.001G207900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.