Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01080 241 / 2e-80 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G021934 [exp] 280 / 2e-95 AT2G01080 249 / 2e-83 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G163800 [exp] 65 / 2e-12 AT2G01080 55 / 6e-09 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036163 [exp] 261 / 9e-87 AT2G01080 267 / 2e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10005728 [exp] 200 / 7e-62 AT2G01080 213 / 4e-67 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10032932 [exp] 43 / 7e-05 AT5G53730 211 / 4e-69 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10035612 [exp] 42 / 0.0003 AT3G54200 142 / 8e-42 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10003238 [exp] 41 / 0.0004 AT3G54200 143 / 3e-42 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF03168 [poplar] [flax] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Potri.001G208000.1 pacid=42788056 polypeptide=Potri.001G208000.1.p locus=Potri.001G208000 ID=Potri.001G208000.1.v4.1 annot-version=v4.1 ATGCCACCCAACAGTAATCTCAGTAGTGGTGAGAACCCAACAACAAGACCACCGCCTTCAAACCAAAACCACCACCACCTATGCTACCCAACAACAACAA GAACAACGTCGTCGTCGTCCTCACCCTCCTTCAGAGGCTGCTGTTGCTGCCTCGTCCTCCTCTTCTCCCTCCTTGCCCTCCTAATTCTAGCCGTTTTCCT CGTCATAATGCTGGCAGTCAAACCCAAGAAACCCCAGTTCGATCTCCAACAGGTTGGAGTCCAGTACATGGGCATATCCGCACCCAATCCATCCGCCTCT CCGGACCCCACAAGCACCACCACACCAGCCTCCGCCTCTCTTTCTTTAACCATTAACATGCTGTTCACCGCTGTTAACCCAAATAAGGTAGGGATCAGGT ACGGGGAGTCCAGTTTTACTGTCATGTACAGTGGGATTCCTTTGGGGAAGGCTTTAGTGCCTGGGTTTTATCAGGAAGCTCACAGTCAGAGACAGGTGGA GGCCACCATATCCGTTGATCGATATAGCTTGATGCAAGCTTATGCTTCTGATTTGATCAGAGATGCCTCCTTGAATGATCGTGTGGAGCTCAGAGTTCTC GGTCAAGTCGGTGCTAAGATCCGCGTTCTAGACTTCGATTCCCCTGGTGTTCAGGTATCAGTGGATTGTGCAATAGTGATAAGTCCAAGAAAACAGTCTC TTACTTACAAGCAGTGTGGATTCGATGGATTGAATGTTTGA
AA sequence Show only first row Show all	>Potri.001G208000.1 pacid=42788056 polypeptide=Potri.001G208000.1.p locus=Potri.001G208000 ID=Potri.001G208000.1.v4.1 annot-version=v4.1 MPPNSNLSSGENPTTRPPPSNQNHHHLCYPTTTRTTSSSSSPSFRGCCCCLVLLFSLLALLILAVFLVIMLAVKPKKPQFDLQQVGVQYMGISAPNPSAS PDPTSTTTPASASLSLTINMLFTAVNPNKVGIRYGESSFTVMYSGIPLGKALVPGFYQEAHSQRQVEATISVDRYSLMQAYASDLIRDASLNDRVELRVL GQVGAKIRVLDFDSPGVQVSVDCAIVISPRKQSLTYKQCGFDGLNV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01080			Late embryogenesis abundant (L...		Potri.001G208000 [exp]	0	1
AT2G23060			Acyl-CoA N-acyltransferases (N...		Potri.005G146100 [exp]	1.00	0.8747	HLS1.1
AT4G35900	bZIP	ATBZIP14, FD-1,...	Basic-leucine zipper (bZIP) tr...		Potri.005G109500 [exp]	2.00	0.8693
AT3G54440			glycoside hydrolase family 2 p...		Potri.003G196500 [exp]	2.44	0.8358
AT3G51660			Tautomerase/MIF superfamily pr...		Potri.006G104800 [exp]	2.64	0.8167
AT3G55760			unknown protein		Potri.008G159500 [exp]	4.47	0.8194
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Potri.010G110700 [exp]	6.48	0.8182	GAI.1
AT2G23210			UDP-Glycosyltransferase superf...		Potri.009G095550 [exp]	8.00	0.8265
AT1G70000	MYB		myb-like transcription factor ...		Potri.015G069000 [exp]	9.94	0.7795
AT4G20800			FAD-binding Berberine family p...		Potri.001G459500 [exp]	12.04	0.7496
AT1G15290			Tetratricopeptide repeat (TPR)...		Potri.003G031000 [exp]	14.83	0.7601

Compare expression of checked genes

Potri.001G208000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.