Plant FIBer expression Database

Potri.001G208200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G15200 313 / 2e-103 protein-protein interaction regulator family protein (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G021900
[exp]
404 / 2e-139 AT1G15200 290 / 6e-95 protein-protein interaction regulator family protein (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023800
[exp]
323 / 5e-107 AT1G15200 399 / 7e-137 protein-protein interaction regulator family protein (.1.2.3.4)
Lus10003959
[exp]
310 / 6e-102 AT1G15200 395 / 6e-135 protein-protein interaction regulator family protein (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04696 Pinin_SDK_memA pinin/SDK/memA/ protein conserved region
Representative CDS sequence
>Potri.001G208200.1 pacid=42790068 polypeptide=Potri.001G208200.1.p locus=Potri.001G208200 ID=Potri.001G208200.1.v4.1 annot-version=v4.1
ATGGGTAGTAGCAGTGCTGTAGAGAAAACGGAGAACGAGCTCCAACGAGAGATCGATGAGCTCCATCGCCAGCAACGCCAGATTTCGGAGCGCCTTCGTG
ATCCTCGGGGACTTCGAAGGGGAGGCTTTTCCTCCGCCGCCGCCGCCGCCCCTCGAAACTTCGCTTCTAACGGTGCTCGTCATCGCGGCTTTGTTCGACC
GGCTGATAGGAACGAGGCAGAAGATCAACCTCCTGCGAAAAGGCGACTTTTATCTGCTGTTGTTAAGGTGGAGGAGGATGGAGAGATCATTGAGGATCCT
GCCAGAGCAGAGGATGTGAAGAAGCAGCAATTGGCTGAGGAAGGAAATGTTGACCCTGCTAAAGGGACTCTGGCTGATGGAAAGCCTGCCATGTTAAGGC
AAAGTGGTTGGTCTAGGAGAGATGTCAATCAAAGAGCAGTGAAGAGGGTGGTTGAAACTCCAGTGATTGAGCCTGTTCCAAGGGTGTTACCCAAGAATCA
GGATCCAAGCTTGGTTAGCAGAAACAAAAGAATGCTGGGGCAACTCTTAGGTACTCTTGAGAAATTCAGGAAAGAAGATATGAAACTTTCAGGCACTGAA
GCATTTATACAAAGGTCAAATGCCTTGCAAAGAGCTGAACAAAAAGCACGTGAAGAAAGTGAAAGGCTGAGGCAACAAGAGCGTGAACAAATTGCTGAAC
AGAGGAAGAAAGATCTGACTCTCAGAGCGCGTATTGCTGCAAAGGCTGAAGAAAAGAAGTTGGAATTGCTGTTTATTCGCTGGAGTGAGCACCACAAAAA
ACTTAGCAATTTTATAAGGACCAAGGCAGAACCTCCGATTTATTATCTGTTTAAAAAGCCGTTGGAAAAAGATGCCACCTTACTTGACCAGCAAAGAGAA
CAGGCATTTTTAGAATGGAAAGCTGCTAGGAGAGAGGAATTATCTGAATATCAGAAGCAGATTGGGGATCAGCATCTTGGCTATGTGGAAAAGGAGTTGG
AGAGGTGGCAAAATGCAAGAAAAGCGAGGAGAGCGAACAATGATGCGAACTTGCAAGAAACAATGGACAAAGAACTGGATACCCACAGGCTTGAGCATGG
TCCCAAGACAAGAAAGATACCTGGTGGAAGCAACAATGAAGACGAGGATGACGTGGAGGATATCAATGTCGGGGAGGATGACTTGATGGATGATGTTCTG
GTGGTTGATGATAACAGCAGGAGGGTTGATGAGGTAGCCCAGCCTGAACCCAATGATACCAGCCCCCCCTCCTAA
AA sequence
>Potri.001G208200.1 pacid=42790068 polypeptide=Potri.001G208200.1.p locus=Potri.001G208200 ID=Potri.001G208200.1.v4.1 annot-version=v4.1
MGSSSAVEKTENELQREIDELHRQQRQISERLRDPRGLRRGGFSSAAAAAPRNFASNGARHRGFVRPADRNEAEDQPPAKRRLLSAVVKVEEDGEIIEDP
ARAEDVKKQQLAEEGNVDPAKGTLADGKPAMLRQSGWSRRDVNQRAVKRVVETPVIEPVPRVLPKNQDPSLVSRNKRMLGQLLGTLEKFRKEDMKLSGTE
AFIQRSNALQRAEQKAREESERLRQQEREQIAEQRKKDLTLRARIAAKAEEKKLELLFIRWSEHHKKLSNFIRTKAEPPIYYLFKKPLEKDATLLDQQRE
QAFLEWKAARREELSEYQKQIGDQHLGYVEKELERWQNARKARRANNDANLQETMDKELDTHRLEHGPKTRKIPGGSNNEDEDDVEDINVGEDDLMDDVL
VVDDNSRRVDEVAQPEPNDTSPPS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G15200 protein-protein interaction re... Potri.001G208200
[exp]
0 1
Potri.004G188432
[exp]
4.00 0.9268
AT3G14610 CYP72A7 "cytochrome P450, family 72, s... Potri.005G126600
[exp]
4.00 0.9346
AT1G50410 SNF2 domain-containing protein... Potri.014G005701
[exp]
4.24 0.9322
AT4G36980 unknown protein Potri.007G044100
[exp]
5.74 0.9016
Potri.017G020864
[exp]
7.48 0.9099
AT4G36690 ATU2AF65A U2 snRNP auxilliary factor, la... Potri.005G125500
[exp]
9.79 0.8799
AT1G51550 Kelch repeat-containing F-box ... Potri.008G006300
[exp]
9.94 0.8796
AT1G05160 ATKAO1, CYP88A3 ENT-KAURENOIC ACID OXYDASE 1, ... Potri.013G161800
[exp]
10.95 0.8877 Pt-KAO2.1,CYP88A8
AT2G02250 ATPP2-B2 phloem protein 2-B2 (.1) Potri.018G016000
[exp]
12.04 0.9178
AT1G33500 unknown protein Potri.013G095400
[exp]
12.24 0.8857

Potri.001G208200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.