Plant FIBer expression Database

Potri.001G208700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G54630 428 / 3e-144 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030584
[exp]
547 / 0 AT3G54630 471 / 7e-161 unknown protein
Lus10030643
[exp]
515 / 8e-179 AT3G54630 412 / 9e-139 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03801 Ndc80_HEC HEC/Ndc80p family
Representative CDS sequence
>Potri.001G208700.1 pacid=42791227 polypeptide=Potri.001G208700.1.p locus=Potri.001G208700 ID=Potri.001G208700.1.v4.1 annot-version=v4.1
ATGAGAGGCGCAAGTCACCGCCGCCCAACAAACTCTTTCAACCCACAGCCGACGCCCGATCACCACCGCCATCAATACGCCAACAACACCTCCCGCGATT
CCGATGCCAGTTTCGCCAGCAGTCGCCCATCCTCCATCGGCGTTGGACGCACCGCCGACCCATATACTGAGAAGGCTCACCAGGCCTCCGCAATTCGCGC
AATCAACGCTTACCTCTCCTCGCACTCCTCCAAACTCTTGCCACCTAACTCAACCCCCTCCGGTAAAGATATCACCGAAACCCTAAAATACCTCCTCCAC
CAACTCGATTACGAATCGACGAAACTTGAGGATGATCTAGCTTCCATCTTGAAATCCCTCAATTGCCCCTTCAAATTCAACAAATCTACACTCCGTGCCC
CCAATACTCCTCACAATTGGCCTTCCTATGTAGCCATAATCCACTGGCTAGTCCAGCTTGCGATGTATAGAGAGGATTTGGCGGCCAAGACGGGATCTTT
GGTCGAAAACAACAGCATGTTTATGTATGCTTTGGATAGTTACCTGAATTATATTCGCGGCAATGATGATTCGGTGTTGGAATTGGATAACGAATTTATG
GGGAAGCTAGGGAAAGAGAGGGAGTCCGTGTTGGAAAATGTTAGGGTTTTGGAAGCGAGTCTGAAAGAAACTGAGGCAAAAGCGGAGGCATTGAGAGCAG
GGCCTACAGAAAGGGAGAGGTTGGAGAAGGAGAGGAGTGTTTTGGAGGAGGATGTGAAGAAGTTCCATGCTATGATTGGAGAGTTCACTCAGGGGATCGA
GGTGTTGGAGAAAGGGTTGGAGGAGAAAAGGAAGGAAATGGAGACAAAAGTGGAGGAGAAAAAGAAGCTCGATGAGGAGAATGATGAGTTGAAGAAGAGG
GTGGAGGAGCAGAGTTTTAATCCGAGGGATGCTGAGAGGATGAAGAGGGAGTTGCAGGTAGTGGATAGAGATATTGTGGAGGCTGAGGCTTCAAGGAATG
CTTGGGAGGAGAAGATGTGGGATCTTGATGCTACAATTGCACATAAGTTTAAGGAGATTGAGGCACTTGCTATGGAGTGTAACCAGGCTACTAGGAGGTT
AAAGCTTGGAAATGGCTATCAATATGTGCCTAATGCCAATGGGTCCACAGCTGCTGAGATCATGGGGCTTGACTACAAAACCACAATTAAGCCTGGGCTT
GAATCCTTTGCTGCTGCTGTAAAGGGAAGTTCTATGGCAAAACTGGAAGAGTTGATTTTGCTTCAAAAACAGTCATCAGAATTAGCTGCTAAGATTGAGG
GAAAAAGAAATCGTACCTCCACACTTCAATCGCATATTGATGAAATGGAAGCTCAGTTGAACTTGTCAAGGAAAGAAACAGAAGACAGCACTTCTAGATG
TGCAGCTGAAGCTAAAAAGCTCGTAGAGGATGTTCAGATAGAGGCTCATAACTTGGATGTTTTGGAAAGAGAAGCAGCAGAAATTTTAAAGGCTGCCGAA
CAAAAGTTGCAGGAGGCAATCAAAACAAGTGAAGAAGAAATTCAGATGCAGGCCGTTGAACTTCTTGCTCTGGTTGATTCAGTCTCAAAATGCAAAGAAC
AAATCGAGTCCAAAATCTCAGAGTCGAAAATCAAGTTATCTGAAACCGTGGTTGCTGTATCAAATGCTTACAAGGGTTCCTTATCAGCACAATTTGGTAT
CAATCTTGATATCAACCATTAA
AA sequence
>Potri.001G208700.1 pacid=42791227 polypeptide=Potri.001G208700.1.p locus=Potri.001G208700 ID=Potri.001G208700.1.v4.1 annot-version=v4.1
MRGASHRRPTNSFNPQPTPDHHRHQYANNTSRDSDASFASSRPSSIGVGRTADPYTEKAHQASAIRAINAYLSSHSSKLLPPNSTPSGKDITETLKYLLH
QLDYESTKLEDDLASILKSLNCPFKFNKSTLRAPNTPHNWPSYVAIIHWLVQLAMYREDLAAKTGSLVENNSMFMYALDSYLNYIRGNDDSVLELDNEFM
GKLGKERESVLENVRVLEASLKETEAKAEALRAGPTERERLEKERSVLEEDVKKFHAMIGEFTQGIEVLEKGLEEKRKEMETKVEEKKKLDEENDELKKR
VEEQSFNPRDAERMKRELQVVDRDIVEAEASRNAWEEKMWDLDATIAHKFKEIEALAMECNQATRRLKLGNGYQYVPNANGSTAAEIMGLDYKTTIKPGL
ESFAAAVKGSSMAKLEELILLQKQSSELAAKIEGKRNRTSTLQSHIDEMEAQLNLSRKETEDSTSRCAAEAKKLVEDVQIEAHNLDVLEREAAEILKAAE
QKLQEAIKTSEEEIQMQAVELLALVDSVSKCKEQIESKISESKIKLSETVVAVSNAYKGSLSAQFGINLDINH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G54630 unknown protein Potri.001G208700
[exp]
0 1
AT5G55820 WYR WYRD, unknown protein Potri.001G368200
[exp]
5.00 0.8001
AT2G45590 Protein kinase superfamily pro... Potri.014G072900
[exp]
6.63 0.7985
AT1G03350 BSD domain-containing protein ... Potri.015G050700
[exp]
9.16 0.7851
AT3G06130 Heavy metal transport/detoxifi... Potri.013G025300
[exp]
9.21 0.7764
AT5G52280 Myosin heavy chain-related pro... Potri.012G141200
[exp]
11.66 0.7731
AT3G07610 IBM1 increase in bonsai methylation... Potri.005G082901
[exp]
12.00 0.7757
AT5G49880 mitotic checkpoint family prot... Potri.003G000900
[exp]
15.00 0.7334
AT1G49870 unknown protein Potri.001G296700
[exp]
24.12 0.7942
AT1G22030 unknown protein Potri.005G170700
[exp]
31.30 0.7115
AT1G65470 NFB2, FAS1 NUCLEOSOME/CHROMATIN ASSEMBLY ... Potri.008G077800
[exp]
31.93 0.7605

Potri.001G208700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.