Plant FIBer expression Database

Potri.001G208900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G06350 756 / 0 ARM repeat superfamily protein (.1)
AT5G27010 675 / 0 ARM repeat superfamily protein (.1)
AT4G04680 167 / 2e-46 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G095700
[exp]
1589 / 0 AT5G06350 753 / 0.0 ARM repeat superfamily protein (.1)
Potri.011G096201
[exp]
157 / 5e-45 AT5G06350 51 / 1e-08 ARM repeat superfamily protein (.1)
Potri.006G203601
[exp]
84 / 6e-19 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029399
[exp]
794 / 0 AT5G06350 675 / 0.0 ARM repeat superfamily protein (.1)
Lus10004194
[exp]
498 / 1e-161 AT5G06350 432 / 3e-136 ARM repeat superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF12333 Ipi1_N Rix1 complex component involved in 60S ribosome maturation
Representative CDS sequence
>Potri.001G208900.8 pacid=42790442 polypeptide=Potri.001G208900.8.p locus=Potri.001G208900 ID=Potri.001G208900.8.v4.1 annot-version=v4.1
ATGGCAAAAACTAAGGGTTCTTCCAAGAAGCAGCAAAAGCGTGGAATTGACTTCAAAAAAATAAAGCGAAAGATCGGCAGGAAATTGCCACCTCCTAAGA
ATACTACTAACACAGAAATTAAATCCAAAGCAATTGTTCTTCCGGAGCAGAGTGTGGCATCAGAGAAAGCAGGTTTAGCTGTGAGCAAGAAAGGCTTGAC
TTTGAAAGAGCTTCTTCAACATACATCCCATCACAATGCGAAAGTCCGTAAAGATGCCTTGATGGGCATGAAGGATTTATTCCTCAATCATCCAGAAGAG
CTTAAATTGCACAGATATGCTGTTATAGAAAAATTACGTGAACGGATGAGTGATGATGAGAAAACTGTTCGAGAAAACCTATATCAACTTCTTAAGTTAG
TGATTTTACCGGGCTGCAAAGAGGATAATCAAGGACCTGTCATTTCGTTAATGATGGCTTACATTTTTAATGCAATGACACATTTAGCAATTGACGTTCG
ACTTATGGCATTCAAATTTTTTGATCTCGCTGTTGAATATCATCCTCCTTCATTTTTCTCGTATGCTGAAAAGATACTTCAAAATTATGAAGATATTCTT
CGGAAGAACCAGTTCCATTTAGAAGACAAAGTCAAGCTGAAGAATGCTCTTGCTGGTTTGGTGCGATGCTTGTTGTTGTTGCCATCTAGTAAAGAAGTTA
ACCTGCCTGCAAAGAATATCCCTGAGAAAAAAATATTGCAAGCTTTTGAGCCTGATGTGCCTACAGTATTTGCAGAATATTCTGTCATCATCAAGAAGCT
GAAAGACCTTGTACCAGTTTTAGTCAATTGCTTCCAAGATTTTCTCCCTGTACTTCACGACTCACTAGATGCACAATCATTTGATTGCATGCTTAACATA
CTTCGGAGCATAGATCTTGCAGTCGCATTCTTTATCCATGGGATTCAGCAAGGTCATCCCGAATCACCACCTCTTGATCAAAGCTTCTCATCAGTATTGT
TGAAGAAGTTACTAGTTGTGTTTCCCCTCAGTCCAATGCATCACCTTTCAGAAAAGGATGATGACAGATATGTTATCTTGAACATTGTAATTACAGAAAT
ATTTATGCACTTAAGTGAATGGATCTGCCCACCTGCTGTCTTATTTGAGAAATTTCTAACATTTGTGGAGTACGTGTTGCTTGAAAAGAGCTGCAGTAAC
GTGCGATCTAACAAAGCAGTTCGAGAAAAGCAGATATCTACACTGATTCCTTTTATCCCAAAACTTGTGTCACGGGTGATTGGAAATTGGAAGAATCGCC
TTCTCCAGGCATTTACAAAGACATTCCAGGATTGCAGTCCAGAGTCTTCAGTAAAATTAGCTTGCCTTGCTGCAATTGAAGAAATGGTCATTTCTCATGA
AGATCTGCTGTGCACAGATGTCAATGATTCAGGACTATCTGACTACAAGATTACTTGGATAAGAGAGCTGCCTATGTTACTCATTCTGCTAGGCGACCGG
CACTCATCCTCTTCCAAGGTTGTGTTGCATCTTCTACTTCGCCTGGGGCAACGTTCATTGTTGTATGATGATATGCAAGGCTTGCTGAAAGAGTTCTACA
GCACAGATCAAGACAAAGGGAACATATGTTATGGTCCTTTTTTAAGGCTAGCCAGGGATTCACAAGAACTCTCTATCTGTTGTCTTTATTATTTTTCTCA
ACTGGATTCAACTTTGCTGAAGTCAATTGCTTCTTGCTGCTTGTGTCATGAGTTGGATCCGTTTATGTTATTCCGGATCATAGAGGTTTTACATTCAACC
TACAAAGCTGGCCATATTCAGATTTCTGACTTCATCAGCTTCTTAATCACTTTGGCTTCGCGTTTCAAAGTTTTTCCTGAAAATATTTTTCCTGCCACGG
AGAGAGATAAGAAGACCTCAAATCGTGCAACTTTTAAATCATTGATCAGTGTTGTTTGCTCATGCCTGTCGCAGATGGGTGACAATTCTCTAGTTTTTGC
GATTCTAGAGAAAGTAATACTAGAGCAGATATCATTAAAACCACCTCTGGACAATTCCTGTGCTATGCTCAGAATGCTTGTTGCACTGGATTCTAAGCCC
ACGAGACTTTCTAAACAAAGTATTTGCTCTTTAAGCAATGTCCTTTCAGCATATCTCATTGATGTTGCACATTGTGTTCCAGAAGATGATGATGAGAGCA
TGAGCTCCATCCATGGACAAACACGTCGTTATTATCTTCTGCCTAGCTTTATCCTGTTTGATAGAAGTCACAAACTTCTCAATCTTGTGTTGAACGTGAT
GGGGTCATCGATTAATGGAAGAAGTTTCTCACTTCTATCTGGTGATCGTATCTGTTATGCCAAGGGGAGCTCAAGTATTATAAATGCTATTGTTTCTGTT
TTACTATGGATGCAAAGGGAAGCTAAGGTTCAGCAAATTCTTTATTTATATAAGGAAGAGATTGACCACATTTCACGAAGCATATGCTCTTTACAGTCTT
TAGAGGAAATCAAGGTGCCAATAGAAGAAAGACACATAATAAAGTGTGCAATTGATCGATTAAAGACTCTAACAAGTTCATTATATCAGTAG
AA sequence
>Potri.001G208900.8 pacid=42790442 polypeptide=Potri.001G208900.8.p locus=Potri.001G208900 ID=Potri.001G208900.8.v4.1 annot-version=v4.1
MAKTKGSSKKQQKRGIDFKKIKRKIGRKLPPPKNTTNTEIKSKAIVLPEQSVASEKAGLAVSKKGLTLKELLQHTSHHNAKVRKDALMGMKDLFLNHPEE
LKLHRYAVIEKLRERMSDDEKTVRENLYQLLKLVILPGCKEDNQGPVISLMMAYIFNAMTHLAIDVRLMAFKFFDLAVEYHPPSFFSYAEKILQNYEDIL
RKNQFHLEDKVKLKNALAGLVRCLLLLPSSKEVNLPAKNIPEKKILQAFEPDVPTVFAEYSVIIKKLKDLVPVLVNCFQDFLPVLHDSLDAQSFDCMLNI
LRSIDLAVAFFIHGIQQGHPESPPLDQSFSSVLLKKLLVVFPLSPMHHLSEKDDDRYVILNIVITEIFMHLSEWICPPAVLFEKFLTFVEYVLLEKSCSN
VRSNKAVREKQISTLIPFIPKLVSRVIGNWKNRLLQAFTKTFQDCSPESSVKLACLAAIEEMVISHEDLLCTDVNDSGLSDYKITWIRELPMLLILLGDR
HSSSSKVVLHLLLRLGQRSLLYDDMQGLLKEFYSTDQDKGNICYGPFLRLARDSQELSICCLYYFSQLDSTLLKSIASCCLCHELDPFMLFRIIEVLHST
YKAGHIQISDFISFLITLASRFKVFPENIFPATERDKKTSNRATFKSLISVVCSCLSQMGDNSLVFAILEKVILEQISLKPPLDNSCAMLRMLVALDSKP
TRLSKQSICSLSNVLSAYLIDVAHCVPEDDDESMSSIHGQTRRYYLLPSFILFDRSHKLLNLVLNVMGSSINGRSFSLLSGDRICYAKGSSSIINAIVSV
LLWMQREAKVQQILYLYKEEIDHISRSICSLQSLEEIKVPIEERHIIKCAIDRLKTLTSSLYQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G06350 ARM repeat superfamily protein... Potri.001G208900
[exp]
0 1
AT3G57300 ATINO80 INO80 ortholog (.1.2) Potri.006G047100
[exp]
3.46 0.8812
AT5G55310 TOP1alpha, TOP1... DNA topoisomerase 1 beta (.1) Potri.001G359700
[exp]
6.48 0.8505 TOP1.1
AT1G45332 Translation elongation factor ... Potri.003G109900
[exp]
8.48 0.8436
AT5G20930 TSL TOUSLED, Protein kinase superf... Potri.009G155400
[exp]
8.94 0.8285
AT5G23150 HUA2 ENHANCER OF AG-4 2, Tudor/PWWP... Potri.005G092700
[exp]
9.79 0.8699
AT4G02560 HD LD luminidependens, Homeodomain-l... Potri.002G209216
[exp]
13.41 0.8697
AT4G19610 nucleotide binding;nucleic aci... Potri.003G149600
[exp]
15.68 0.8036
AT4G02560 HD LD luminidependens, Homeodomain-l... Potri.014G132800
[exp]
15.74 0.8538 Pt-LD.2
AT1G04210 Leucine-rich repeat protein ki... Potri.010G081400
[exp]
15.87 0.8506
AT4G01860 Transducin family protein / WD... Potri.002G189400
[exp]
15.96 0.8282

Potri.001G208900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.