Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33230 483 / 3e-165 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G27870 464 / 2e-156 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G05610 461 / 5e-156 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G26450 458 / 2e-155 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G47030 437 / 2e-147 VGDH1 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G47040 432 / 2e-145 VGD1 VANGUARD1, Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G49180 431 / 2e-145 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G06830 418 / 2e-140 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G14310 411 / 2e-137 ATPME3 pectin methylesterase 3 (.1) AT3G62170 410 / 3e-137 VGDH2 VANGUARD 1 homolog 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G021600 [exp] 1032 / 0 AT4G33230 484 / 1e-165 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G021300 [exp] 776 / 0 AT4G33230 459 / 5e-156 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.001G209200 [exp] 772 / 0 AT5G49180 459 / 2e-156 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.018G051200 [exp] 523 / 0 AT2G26450 634 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.006G134700 [exp] 510 / 3e-176 AT4G33230 608 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G010464 [exp] 461 / 2e-157 AT5G27870 619 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.013G013400 [exp] 445 / 1e-150 AT3G05610 580 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.005G022900 [exp] 444 / 1e-150 AT3G05610 593 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G072800 [exp] 424 / 2e-142 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023775 [exp] 685 / 0 AT5G49180 454 / 3e-154 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10003968 [exp] 680 / 0 AT5G49180 456 / 3e-155 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10002976 [exp] 501 / 2e-173 AT2G26450 429 / 2e-144 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10018335 [exp] 486 / 3e-166 AT3G05610 446 / 3e-149 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039927 [exp] 472 / 1e-160 AT2G26450 598 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027656 [exp] 420 / 2e-143 AT4G33230 499 / 6e-174 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006940 [exp] 420 / 5e-141 AT3G05610 569 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10020909 [exp] 398 / 1e-132 AT3G05610 547 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10033466 [exp] 396 / 2e-131 AT3G05610 556 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10013344 [exp] 382 / 1e-126 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase CL0268 [poplar] [flax] PF04043 [poplar] [flax] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.001G209000.1 pacid=42792833 polypeptide=Potri.001G209000.1.p locus=Potri.001G209000 ID=Potri.001G209000.1.v4.1 annot-version=v4.1 ATGTTTCGTAAAGTAGTTGTTCCCGTTATTTCCCTCATTCTTGTTGTCGGTGTTGTCATTGGGGTGGTGGCCGTAGTGAATAACAATAAGGGCTCCGATG GAGGCAAGAAAGAAGAAAATTTGTCTCCAGAAATGAAGATAGCTACTCAGCTATGTCAACCATCAGAGTACAAGGAGGCTTGCACCGAGACCCTCAGCTC TGTGAACAGCACCGATCCTAAAGAATTTGTCAAGCAAGCTATACTGGCTGCTTCGGATGCCGTGAAAAAATCATTTAACTTTTCCGAGGATTTGGTCGTC AAGGCCAGCAAAGACAAGCGCGAGAAAATGGCCTTGGATGATTGCAAGGAGTTGTTGGACTACGCCGTCCAAGAACTTCAGGCATCAATGTCATTGGTGG GAGATAGCGATTTGCACACCACAAATGAACGAGTTGCAGAACTACAAAGTTGGTTGAGCTCCGTCCTTGCATATCAAGAAACTTGCGTCGATGGATTCAG TGATAACAGCACCATCAAGCCTACCATAGAACAAGGTTTTGTTGATGCTAGCCACCTCACAGATAACGTTTTGGCTATCATCTCTGGCTTGTCAGGCTTC CTCAAATCTGTTGGTCTCCAGTTTAACATTCCTTCTAACTCTCGTCGCCTTCTTGCCGAGGATGGATTTCCCACCTGGTTCTCTGGTGCTGATCGTAAGC TTCTGGCTGCACAAGGCAATGGTAAGGTTAAACCAAACGCGGTTGTGGCTCAGGATGGTAGTGGACAATTCAAGACCATCAGTGCTGCCATTGCTGCATA TCCCAATAACCTCAAGGGACGATATATCATCTATGTTAAGGCTGGAATTTATCGTGAGTACGTTACTGTTGACAAGAAGAAGCCCAATGTGTTCATCTAC GGTGATGGACCAAGGAAGACCATCGTCACAGGAAGCAAGAGCTTTGCCAAGGATGGCTTGGGCACCTGGAAGACCGCTACTTTTGTGGCTGAAGCTGATG GGTTCATTGCCAAGTCGATGGGATTCCAAAATACTGCTGGTCCTGACGGGCACCAGGCTGTGGCACTTCGCGTAAGTTCTGATATGTCAGCATTCCTCAA CTGCAGGATGGACGGGTATCAAGACACATTGCTGTACCAAGCTAAGCGTCAATTCTACCGCAATTGTGTTATTTCTGGCACCGTTGATTTCATCTTCGGT TATGGCGCTGCTGTGATCCAAAACTCGTTGATTGTTGTACGGAGACCCAATGACAACCAGCAGAACTCTGTGACTGCAGATGGCAGGAAAGAGAAGCACG CCACCACCGGGTTGGTCATCCACAACTGCAGGATTGTCCCTGAGCAGAAGCTAGTCGCTGAAAGGTTCAAGATCCCAACATACTTGGGCAGGCCATGGAA GCCATTCTCCAGGACTGTTGTCATGGAATCAGAATTAGCAGATTTTATTCAGCCGGCGGGATGGATGCCATGGGCTGGAAGCATACATCTTGATACTCTG TACTATGCCGAGTATGCCAACAGAGGCGCTGGTGCAAACACCAACAAGAGGGTGAACTGGAAAACTTTCCATGTCATTAACAGGAACGAGGCTCTGCAAT TCACTGCCGGCCAATTCCTTAAGGGCGCTTCTTGGATTAAAAATGCTGGAGTGCCTGTGTTGCTAGGCCTAAAACGTTGA
AA sequence Show only first row Show all	>Potri.001G209000.1 pacid=42792833 polypeptide=Potri.001G209000.1.p locus=Potri.001G209000 ID=Potri.001G209000.1.v4.1 annot-version=v4.1 MFRKVVVPVISLILVVGVVIGVVAVVNNNKGSDGGKKEENLSPEMKIATQLCQPSEYKEACTETLSSVNSTDPKEFVKQAILAASDAVKKSFNFSEDLVV KASKDKREKMALDDCKELLDYAVQELQASMSLVGDSDLHTTNERVAELQSWLSSVLAYQETCVDGFSDNSTIKPTIEQGFVDASHLTDNVLAIISGLSGF LKSVGLQFNIPSNSRRLLAEDGFPTWFSGADRKLLAAQGNGKVKPNAVVAQDGSGQFKTISAAIAAYPNNLKGRYIIYVKAGIYREYVTVDKKKPNVFIY GDGPRKTIVTGSKSFAKDGLGTWKTATFVAEADGFIAKSMGFQNTAGPDGHQAVALRVSSDMSAFLNCRMDGYQDTLLYQAKRQFYRNCVISGTVDFIFG YGAAVIQNSLIVVRRPNDNQQNSVTADGRKEKHATTGLVIHNCRIVPEQKLVAERFKIPTYLGRPWKPFSRTVVMESELADFIQPAGWMPWAGSIHLDTL YYAEYANRGAGANTNKRVNWKTFHVINRNEALQFTAGQFLKGASWIKNAGVPVLLGLKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33230			Plant invertase/pectin methyle...		Potri.001G209000 [exp]	0	1
AT4G25590		ADF7	actin depolymerizing factor 7 ...		Potri.012G141600 [exp]	24.85	0.4977	ADF.1
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.001G183300 [exp]	34.98	0.6565
AT3G17030			Nucleic acid-binding proteins ...		Potri.008G105850 [exp]	38.72	0.4592
					Potri.014G192400 [exp]	49.07	0.5200
AT3G48420			Haloacid dehalogenase-like hyd...		Potri.014G003916 [exp]	53.66	0.5640
					Potri.006G177125 [exp]	60.86	0.6399
AT5G34883			Protein of unknown function (D...		Potri.017G039175 [exp]	66.48	0.7222
					Potri.018G064450 [exp]	66.93	0.5438
					Potri.001G054301 [exp]	82.16	0.4528
AT2G18950		ATHPT, VTE2, TP...	VITAMIN E 2, homogentisate phy...		Potri.018G022000 [exp]	109.86	0.4463

Compare expression of checked genes

Potri.001G209000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.