Plant FIBer expression Database

Potri.001G209200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G49180 459 / 1e-156 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
AT4G33230 459 / 1e-155 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
AT2G26450 447 / 3e-151 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
AT2G47030 437 / 2e-147 VGDH1 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
AT3G05610 435 / 1e-145 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
AT5G27870 434 / 2e-144 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
AT2G47040 425 / 1e-142 VGD1 VANGUARD1, Plant invertase/pectin methylesterase inhibitor superfamily (.1)
AT3G06830 419 / 8e-141 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
AT3G62170 400 / 6e-133 VGDH2 VANGUARD 1 homolog 2 (.1)
AT3G14310 387 / 4e-128 ATPME3 pectin methylesterase 3 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G021300
[exp]
941 / 0 AT4G33230 459 / 5e-156 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Potri.001G209000
[exp]
771 / 0 AT4G33230 483 / 2e-165 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Potri.003G021600
[exp]
748 / 0 AT4G33230 484 / 1e-165 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Potri.018G051200
[exp]
497 / 5e-171 AT2G26450 634 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Potri.006G134700
[exp]
491 / 1e-168 AT4G33230 608 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Potri.010G010464
[exp]
437 / 7e-148 AT5G27870 619 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Potri.013G013400
[exp]
435 / 5e-147 AT3G05610 580 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Potri.005G022900
[exp]
435 / 7e-147 AT3G05610 593 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Potri.003G072800
[exp]
405 / 4e-135 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023775
[exp]
757 / 0 AT5G49180 454 / 3e-154 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Lus10003968
[exp]
753 / 0 AT5G49180 456 / 3e-155 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Lus10018335
[exp]
451 / 8e-153 AT3G05610 446 / 3e-149 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Lus10006940
[exp]
448 / 5e-152 AT3G05610 569 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Lus10039927
[exp]
441 / 3e-148 AT2G26450 598 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Lus10002976
[exp]
431 / 1e-145 AT2G26450 429 / 2e-144 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Lus10020909
[exp]
410 / 2e-137 AT3G05610 547 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Lus10033466
[exp]
409 / 1e-136 AT3G05610 556 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Lus10027656
[exp]
380 / 9e-128 AT4G33230 499 / 6e-174 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Lus10037489
[exp]
385 / 2e-127 AT5G27870 480 / 3e-164 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0268 Pec_lyase-like PF01095 Pectinesterase Pectinesterase
CL0268 PF04043 PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence
>Potri.001G209200.1 pacid=42789308 polypeptide=Potri.001G209200.1.p locus=Potri.001G209200 ID=Potri.001G209200.1.v4.1 annot-version=v4.1
ATGTTAGGCAAATTAGTTGTTACAGGGATTTCCCTGATCCTTGTCGTGGGTGTGATCATTGGCGTGGTGGCTACTGTCCAACGCAGCGGTGGGTCCGTTG
AACATACAGAGAGCTTGTCTCCGCAAATGAAGGCTGTTAGCACACTGTGCCAGCCTACTTATTACAAGGAGGCTTGCACCAACACCCTTAGCGCTGTGAA
CTCTACCGATCCCAAAGAACTAATCAAAGGAGGCATATTAGCCATCTCCGATTCATTGAAGAAATCTTCCAATTTGACTGATGATCTCGTAGTCAAGAAC
AATAGTGATGAGCCCCGTGCCAAAATGGCCTTGAATGACTGCAAAGAGTTATTGCAAGATGCTTCTGAGCAGCTACAGGACACATTGTCAAAGGTGGGTG
GCATTGATTTACAGTCGTTATCAGACCATGCGGATGATTATCGAACATGGTTGAGCTCAATTATTGCGTACCAAGAAATGTGCTTAGATGGATTTGAGGA
AAACAGCCCCTTGAAGGCTCAAGTGCAAAATAGCACGGACTATGGGAGCCAACTCACAGACAACGTTCTGAATATCCTTGCCGGGCTTTCACAAGTTCTT
GGTTCCTTGGGGCTCAAGTTCAATGCTCCCAGCACCTCTCGTCGGCTTCTTCAAGCTGATGGTTATCCCAGCTGGATGTCTGCTGCTGACCGTAAGCTTT
TGGCCTCACGCGGCAATGGCGGGGCGAGACCAAATGCAGTTGTGGCTCATGATGGCAGTGGGAAATTCAAGACTATCAATGCAGCACTTGCCGCATACCC
TAAGGGTCTCAAGGGCCGATATGTTATCTATGTTAAGGCAGGAATCTATCGTGAGTATGTTACTGTGACCAAGGACAAGCCCAATGTGTTCATCTATGGT
GATGGAGCCCGCAGGACCATCGTCACTGGAAACAAGAACTTTGCTAAAGATGGCATAGGCACCTGGAAGACCGCTACATTTATTGTTGAAGCAAATGGAT
TCATCGCCAAGAACATGGGATTTTCCAACACTGCCGGTCCTGATGGCCACCAGGCTGTTGCAATCCGTGTTAATTCAGATATGTCAGCATTCTACAACTG
CAGGTTGGATGGTTATCAAGACACATTGTGTTACCAAGCCGGGCGCCAATTCTACCGCAATTGTGTCCTTTCTGGCACGGTGGACTTCCTCTTTGGTTAT
GGATCAGTGGTGATCCAAAACTCCATGATCGTTGTCCGAAGGCCAAACCCTAGCCAATTCAACACGGTGACGGCTGATGGCCGGAAAGAGAGGGGACAAC
CTGGAGGAATTGTCATTCATAACTGCAGGATTGTCCCTGAGCAGAAACTTGTCCCCGTGAGGTTCAACATCAAGACATACTTGGGTAGGCCATGGAAGGC
ATTCTCTAGGACTGTTGTGATGGAAACACAACTAGCAGACTTCATTCAGCCTGATGGATGGGCCCCATGGAGTGGAAACCAGTTTCTTGACACTCTTTAC
TATGCTGAGTATGCCAACACTGGACCTGGAGCAGCAACTAAAAGGAGGGTCAGGTGGAAAACTCTTCATTTCCTGAGAAGGAATGAAGCTCTTCAATTCA
CTGCCGGTGCATTCCTTCGTGGTGGTCAATGGATTAGAAACACCGGAGTTCCAGCCTTGCTTGGCCTGAGAAGATGA
AA sequence
>Potri.001G209200.1 pacid=42789308 polypeptide=Potri.001G209200.1.p locus=Potri.001G209200 ID=Potri.001G209200.1.v4.1 annot-version=v4.1
MLGKLVVTGISLILVVGVIIGVVATVQRSGGSVEHTESLSPQMKAVSTLCQPTYYKEACTNTLSAVNSTDPKELIKGGILAISDSLKKSSNLTDDLVVKN
NSDEPRAKMALNDCKELLQDASEQLQDTLSKVGGIDLQSLSDHADDYRTWLSSIIAYQEMCLDGFEENSPLKAQVQNSTDYGSQLTDNVLNILAGLSQVL
GSLGLKFNAPSTSRRLLQADGYPSWMSAADRKLLASRGNGGARPNAVVAHDGSGKFKTINAALAAYPKGLKGRYVIYVKAGIYREYVTVTKDKPNVFIYG
DGARRTIVTGNKNFAKDGIGTWKTATFIVEANGFIAKNMGFSNTAGPDGHQAVAIRVNSDMSAFYNCRLDGYQDTLCYQAGRQFYRNCVLSGTVDFLFGY
GSVVIQNSMIVVRRPNPSQFNTVTADGRKERGQPGGIVIHNCRIVPEQKLVPVRFNIKTYLGRPWKAFSRTVVMETQLADFIQPDGWAPWSGNQFLDTLY
YAEYANTGPGAATKRRVRWKTLHFLRRNEALQFTAGAFLRGGQWIRNTGVPALLGLRR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G49180 Plant invertase/pectin methyle... Potri.001G209200
[exp]
0 1

Potri.001G209200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.