Plant FIBer expression Database

Potri.001G209500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G33270 505 / 9e-180 Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G020800
[exp]
651 / 0 AT1G33270 491 / 4e-174 Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020983
[exp]
548 / 0 AT1G33270 508 / 3e-180 Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0323 Patatin PF01734 Patatin Patatin-like phospholipase
Representative CDS sequence
>Potri.001G209500.3 pacid=42788306 polypeptide=Potri.001G209500.3.p locus=Potri.001G209500 ID=Potri.001G209500.3.v4.1 annot-version=v4.1
ATGCTCTTCAAAAAGAAGAAACCAAAAGGACCAAAATTTTCTCCTCCTTCTTCTTCAATGGCTCCTCCCTCACTCTCTACTCTTCTTCCTCACACTCGCC
ACTCTTTCCTTCCCCTTACAAACCCTAATATCACCCACCGTTACATGCTCTCTCTCCAGCCTTCTCATTCTCTATCTTTTGCTGCAAGATTTTCTTCCGA
CAAGCAAAACGACAGCATCACCGAAAACAGAATCACATACCCACCCGCGCAACCACCCGCGCCACCGCAGCCGGAGAAGAAGTCGTTTGCTGTTGCCACT
GGCGAACTTTTCTTGGGAATTGCGTCGAGGGTTTTGAGAAGCACTAATAAAATTAACTATAATGGGAATGTTGATCACGAGGAGAGGATTGGGGCTGTAA
TGAAGGATGAGGTTGAGCCTGAGGTTATATGGGAACAAAGAGTTAAAGATATTGAAGCGGAGAAAGATCGACCTGTGGTTACAAGTCCTGGCTTTAGTTT
CTCTGCTGCTGGCTTGTTGTTTCCTTATCATCTTGGAGTTGCTCACTTGCTTATTGAAAAGGGTTATATCAAGGAAACCACACCATTAGCTGGTTCCTCC
GCTGGCGCTATTGTATGTGCTGTGATTGCCTCTGGGGCCAGTATGCATGAGGCTTTAACAGCTACCAAAGTATTGGCTGAAGATTGTCGGCTAAAAGGGA
CTGCTTTTCGGCTTGGGGCTGTTCTGCGGGATGTTCTTGAAAAGTTTCTGCCAGATGATGTTCACATTAGGTCCAATGGGAGGGTTCGAGTCGCTGTTAC
TCAGATTCTGTGGAGGCCCAGGGGTTTGCTAGTGGATCAGTTTGACTCCAAGGAAGATCTCATTAATGCAGTTGTCACTTCTTCCTTCATTCCAGGGTAT
CTTGCACCAAGGCCCGCAACAATGTTCCGGAATCGACTTTGCATTGATGGTGGTTTGACATTGTTTATGCCACCAACATCTGCTGCTCAGACGGTTCGCA
TTTGTGCTTTCCCTGCCAGTCAAATGGGACTGCAAGGGATCGGGATTAGTCCAGATTGCAATCCTGAAAATAGGGCCAGCCCAAGAGAGCTTTTCAAATG
GGCATTGGAGCCAGCAGAAGATCATGTTCTTGATCGGCTTTTCGAGCTTGGATATTTAGATGCTGCTGTGTGGGCTGAGGAGAACCCTGTGCAGAATGTA
GTTCAAGATGACTGTCCCTTGGTTGAAAATGGCTCCAGTACCTCACCATAA
AA sequence
>Potri.001G209500.3 pacid=42788306 polypeptide=Potri.001G209500.3.p locus=Potri.001G209500 ID=Potri.001G209500.3.v4.1 annot-version=v4.1
MLFKKKKPKGPKFSPPSSSMAPPSLSTLLPHTRHSFLPLTNPNITHRYMLSLQPSHSLSFAARFSSDKQNDSITENRITYPPAQPPAPPQPEKKSFAVAT
GELFLGIASRVLRSTNKINYNGNVDHEERIGAVMKDEVEPEVIWEQRVKDIEAEKDRPVVTSPGFSFSAAGLLFPYHLGVAHLLIEKGYIKETTPLAGSS
AGAIVCAVIASGASMHEALTATKVLAEDCRLKGTAFRLGAVLRDVLEKFLPDDVHIRSNGRVRVAVTQILWRPRGLLVDQFDSKEDLINAVVTSSFIPGY
LAPRPATMFRNRLCIDGGLTLFMPPTSAAQTVRICAFPASQMGLQGIGISPDCNPENRASPRELFKWALEPAEDHVLDRLFELGYLDAAVWAEENPVQNV
VQDDCPLVENGSSTSP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G33270 Acyl transferase/acyl hydrolas... Potri.001G209500
[exp]
0 1
AT1G06110 SKIP16 SKP1/ASK-interacting protein 1... Potri.015G078100
[exp]
2.23 0.9656
AT2G17220 Kin3 kinase 3, Protein kinase super... Potri.018G135300
[exp]
3.00 0.9605
AT5G43260 chaperone protein dnaJ-related... Potri.003G171800
[exp]
4.00 0.9573
AT2G43840 UGT74F1 UDP-glycosyltransferase 74 F1 ... Potri.007G117200
[exp]
7.41 0.9490 Pt-ZOG1.9
AT5G62165 MADS FYF, AGL42 FOREVER YOUNG FLOWER, AGAMOUS-... Potri.012G133000
[exp]
10.58 0.9360
AT2G05620 PGR5 proton gradient regulation 5 (... Potri.010G066900
[exp]
16.73 0.9419 Pt-PGR5.1
AT4G27600 NARA5 GENES NECESSARY FOR THE ACHIE... Potri.013G078600
[exp]
17.66 0.9471
AT3G01060 unknown protein Potri.017G090100
[exp]
22.44 0.9431
AT1G53670 MSRB1, ATMSRB1 methionine sulfoxide reductase... Potri.011G114300
[exp]
22.75 0.9248
AT5G59030 COPT1 copper transporter 1 (.1) Potri.009G038800
[exp]
24.49 0.9274 COPT1.2

Potri.001G209500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.