Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71240 969 / 0 Plant protein of unknown function (DUF639) (.1), Plant protein of unknown function (DUF639) (.2) AT1G48840 264 / 3e-77 Plant protein of unknown function (DUF639) (.1) AT3G18350 247 / 5e-71 Plant protein of unknown function (DUF639) (.1) AT5G23390 216 / 7e-60 Plant protein of unknown function (DUF639) (.1) AT2G21720 140 / 4e-34 Plant protein of unknown function (DUF639) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G046500 [exp] 248 / 3e-71 AT1G48840 942 / 0.0 Plant protein of unknown function (DUF639) (.1) Potri.012G055800 [exp] 241 / 7e-69 AT1G48840 894 / 0.0 Plant protein of unknown function (DUF639) (.1) Potri.008G003000 [exp] 207 / 9e-57 AT5G23390 730 / 0.0 Plant protein of unknown function (DUF639) (.1) Potri.013G062700 [exp] 149 / 4e-37 AT2G21720 839 / 0.0 Plant protein of unknown function (DUF639) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002408 [exp] 1057 / 0 AT1G71240 941 / 0.0 Plant protein of unknown function (DUF639) (.1), Plant protein of unknown function (DUF639) (.2) Lus10027905 [exp] 912 / 0 AT1G71240 806 / 0.0 Plant protein of unknown function (DUF639) (.1), Plant protein of unknown function (DUF639) (.2) Lus10013865 [exp] 259 / 2e-75 AT3G18350 897 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10026581 [exp] 236 / 9e-67 AT1G48840 870 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10020973 [exp] 221 / 8e-62 AT1G48840 899 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10010155 [exp] 207 / 2e-56 AT5G23390 781 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10007431 [exp] 156 / 2e-39 AT2G21720 767 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10010668 [exp] 156 / 2e-39 AT2G21720 775 / 0.0 Plant protein of unknown function (DUF639) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0484 [poplar] [flax] Peroxisome PF04842 [poplar] [flax] DUF639 Plant protein of unknown function (DUF639)
Representative CDS sequence Show only first row Show all	>Potri.001G210200.2 pacid=42791436 polypeptide=Potri.001G210200.2.p locus=Potri.001G210200 ID=Potri.001G210200.2.v4.1 annot-version=v4.1 ATGCTTTCCAAAGTCACATTTTCTCCCCCAAATTCTTGCTCCCTTTTGTACAACAAGGTTGGCTGTTCTGCAAGGATTGGAAGCTCTAGGTTTAAGGTTG CCAGTCAGTTTCAAGGGGACAAATGGAAGATCAACGACATTGATCCCAATGCAGTGCAAGAAAGATTGAATTCATGGTTTTCAAAAACCCAAAACTTTTT GAATGGGGTGACTTTAACTTTAACTTCACCACGGGTAAAGTCTGGTGATAGTGGGAAGCCTGATAATGGAGCTACAGTTGATGCTCAACAACTTGAAGAA ATATTTATGGCAGAGCAGACTATTCACAGCAGCACACCAAATGGGATTCTTTCAGTACCAGCTATTGTATCTATTGAGCAATTTAGCAGGATGAATGGAT TGACGGGGTACAAGTCGCAGAAGATATTCAAAGCGCTTGTCAATGAATCTGTTAATAATGATGCACGTAATTTGGTGGAGTATTGCTGTTTTAGGTTCTT GTCTAGGGATAACTCTGCTATCCATCCCTGCCTCAAGGAGCCAGCATTCCAGCGACTAATTTTCATCACAATGCATGCATGGGAGAATCCTTACCGCAAA GAAAATGATTCTGAAAAAGCTTCTTTTCAGGGGATGCTTGTTGGAGAAGAAGCTTTTGCACGTATTGCTCCTGCTATTTCAGGCATCGCTGATCGCTCCA CGGTGCACAATCTTTTCAGGGCGCTTGCTGGGGATCAACAGGGTATCTCTTTGGGAACATGGGTCACATATGTTGATGAACTTCTCAAAGTTCATGGAGC ACGGAAATCATATGGGACTCGTGAATCCACTTGGATTTCAGATGAGAAAATCTTATGCATCGGCTCTAGCAAGAAGCGGCCTGTTGTCAAGTGGGAGAAT AACATGGCATGGCCTGGGAAAGTTATATTAACTGATAAGGCACTCTATTTTGAGGCATTTGACTTACGGGGGAAGAAAGATTCTACTAGGCTCGATCTTA CAACAGACAAAATGCAGGTGGAGAAAACAAAAGTTGGACCTTTTGGTGTTGTACTTTTTGATTCTGCAGTTTCCATTTCATCTGGTCCTAAATCAGAGAC ATGGGTGCTAGAATTTGTTGACCTGGGAGGTGAATTGAGAAGAGATGTATGGCATGCATTCATCAATGAAGTAATCTCTTTACACAAGTTCATTTGTGAG TTTGGACCTGAGGAGGGTGATCAATCAATAAATCAAGTGTATGGTGCCCAAAAAGGGAAGGAAAGGGCTACCACCAGTGCCATTAATAGTATTGCTAGAC TTCAGGCCCTTCAATTTACAAAGAAGTTGCTGGATGATCCCATCAAACTTGTTCAGTTCTCATATTTGCAAAATGTACCCTATGGTGACATTGTTTACCA AACTCTAGCTGTAAATTATTGGGGTGGAGCATTAGTTAAAAAGTACACCGATACAGATTATCGACCATCTCAAGTGGCAGGTCCTTCTGAAGAGGTACTG GAAATTAGTAATCATGTTTATGACATTGACGGAAGTGTTTACTTACAGAAGTGGAAGAGGTCTCCATCCTGGGAATCTAGTGCTTCCATCAATTTCTGGA AGAATTCCTCAATAAATCAAGGGATGGTATTGAGTAAAAATCTCGTTGTGGCAGATGTGACTCTTATAGAGAGAGCAGCAATGACATGCAAAGAAAAGTG CCAGTTGGTTGAAATAACTCAAGCAACAATTGACGCTGCAACACTTAAGGGGATACCGAGTAACATTGACCTTTTCAAGGAACTGATGCTTCCTTTGACT GTGATTGCTAAGAACTTTGAAAGACTACGACGCTGGGAAGAGCCACATCTGACCATCTCTTTTCTTGCATTCTCATATTTAATTATTTTCAGAAATTTGC TCCCCTATATATTTCCGATGATGCTGATGGTTTTAGCAGCTGCGATGCTGACATTGAAGAGGCTCAAGGATCAAGGACGCTTGGGGAGATTGTTTGGAAA AGTTACTATCCGTGATCAACCACCATCAAATACTATTCAAAAGATCATAGCTCTAAGAGATGCTATGCAGGATGTGGAAAATTATCTCCAGAATATGAAT GTCACTCTTCTAAAAATACGCACGATTGTTCTTGCAGGTTATCCTCAGATAACTACTGAGGTTGCTCTGGTGCTATTTTCTTCCGCTGCCATTCTGCTTT TTGTCCCATTCAAGTATGTTGCTGCTTGTCTTATCTTTGATCTCTTCACTCGGGAGCTCGAGTTCCGGAGGGAAATGGCTAAGAAGTTTGTTACCTTTCT GAAGGAGCGTTGGGACACGGTACCTGCAGCTCCCGTAGCCGTATTACCTTTTGAAAGTAATGTCTCTACACAAGGTAATCAACAGAAGAAAATAGATGAG CAGACAAAAAAGAAGCTATAG
AA sequence Show only first row Show all	>Potri.001G210200.2 pacid=42791436 polypeptide=Potri.001G210200.2.p locus=Potri.001G210200 ID=Potri.001G210200.2.v4.1 annot-version=v4.1 MLSKVTFSPPNSCSLLYNKVGCSARIGSSRFKVASQFQGDKWKINDIDPNAVQERLNSWFSKTQNFLNGVTLTLTSPRVKSGDSGKPDNGATVDAQQLEE IFMAEQTIHSSTPNGILSVPAIVSIEQFSRMNGLTGYKSQKIFKALVNESVNNDARNLVEYCCFRFLSRDNSAIHPCLKEPAFQRLIFITMHAWENPYRK ENDSEKASFQGMLVGEEAFARIAPAISGIADRSTVHNLFRALAGDQQGISLGTWVTYVDELLKVHGARKSYGTRESTWISDEKILCIGSSKKRPVVKWEN NMAWPGKVILTDKALYFEAFDLRGKKDSTRLDLTTDKMQVEKTKVGPFGVVLFDSAVSISSGPKSETWVLEFVDLGGELRRDVWHAFINEVISLHKFICE FGPEEGDQSINQVYGAQKGKERATTSAINSIARLQALQFTKKLLDDPIKLVQFSYLQNVPYGDIVYQTLAVNYWGGALVKKYTDTDYRPSQVAGPSEEVL EISNHVYDIDGSVYLQKWKRSPSWESSASINFWKNSSINQGMVLSKNLVVADVTLIERAAMTCKEKCQLVEITQATIDAATLKGIPSNIDLFKELMLPLT VIAKNFERLRRWEEPHLTISFLAFSYLIIFRNLLPYIFPMMLMVLAAAMLTLKRLKDQGRLGRLFGKVTIRDQPPSNTIQKIIALRDAMQDVENYLQNMN VTLLKIRTIVLAGYPQITTEVALVLFSSAAILLFVPFKYVAACLIFDLFTRELEFRREMAKKFVTFLKERWDTVPAAPVAVLPFESNVSTQGNQQKKIDE QTKKKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71240			Plant protein of unknown funct...		Potri.001G210200 [exp]	0	1
AT3G18110		EMB1270	embryo defective 1270, Pentatr...		Potri.017G036400 [exp]	4.00	0.8942
AT1G48650			DEA(D/H)-box RNA helicase fami...		Potri.015G042500 [exp]	8.36	0.8939
AT3G46970		ATPHS2, PHS2	Arabidopsis thaliana alpha-glu...		Potri.004G048600 [exp]	10.81	0.8831
AT5G02250		ATMTRNASEII, RN...	ribonucleotide reductase 1, EM...		Potri.006G086200 [exp]	15.49	0.8882
AT3G16290		EMB2083	embryo defective 2083, AAA-typ...		Potri.003G050600 [exp]	18.02	0.8780
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Potri.018G103300 [exp]	21.00	0.8930
AT5G63420	Trihelix	EMB2746	embryo defective 2746, RNA-met...		Potri.012G095800 [exp]	22.64	0.9007
AT5G22640		EMB1211	embryo defective 1211, MORN (M...		Potri.009G149100 [exp]	23.45	0.8792
AT4G21380		ARK3	receptor kinase 3 (.1)		Potri.019G120300 [exp]	25.74	0.8700
AT5G42390		SPP	stromal processing peptidase, ...		Potri.002G235700 [exp]	27.05	0.8934

Compare expression of checked genes

Potri.001G210200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.