Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10790 186 / 2e-54 unknown protein AT3G56590 166 / 1e-45 hydroxyproline-rich glycoprotein family protein (.1.2) AT3G10810 153 / 1e-40 zinc finger (C3HC4-type RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G029100 [exp] 179 / 8e-50 AT3G56590 287 / 3e-91 hydroxyproline-rich glycoprotein family protein (.1.2) Potri.006G031800 [exp] 165 / 9e-45 AT3G56590 313 / 5e-101 hydroxyproline-rich glycoprotein family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022968 [exp] 278 / 3e-84 AT1G10790 214 / 8e-63 unknown protein Lus10001613 [exp] 270 / 5e-84 AT3G56590 206 / 6e-62 hydroxyproline-rich glycoprotein family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G210600.6 pacid=42788071 polypeptide=Potri.001G210600.6.p locus=Potri.001G210600 ID=Potri.001G210600.6.v4.1 annot-version=v4.1 ATGGAATATAAAGAGATGGAGAGGGCATCGACACTTGTCTTTAAGTACATTCTCCCATCTCCTCCACCAGTCCCACTACTCCACTTTTGTCCAGGGAAAC CAAGTGGGTTTTTAGAGAGAGAAAAACGAGTGACAGATGCAATTTCTTCAATGGGGAAAGGAGATTCTTCTTATAATCAGGAGCAGCAGCAGAGGCATGA TGATGATGATGATGATGAGAGGAGAACCAGAAGATTGTTCCTTTGTGAGAGATGTTCGATGGGACTTTCAAGAATCAGTTTTAAATGTGTTTTCATTTTG ATGTTGAGTTTGTGCCTTTTGGTCTCTGCTCTCTTTTGGATCTTTCCTTTACATTCTTCTCTACATTCAGTTAGCGGGTTCGATGCTAAAGATGAAGTTA AACTCAGTGCTACAGTACAAGCATACTTCAGACTTCTAAAGCCAGTGGTGCAGCTTGTTACACACATTGCAAGATTAGAATATGATATCAATGAAGAAAT AGGCATCCCAAACGCAAAGGTGGCTGTTCTATCCATGCACCGATTAGCTTCTAATTGGACTGATGTGGTGTTTGGTTTTATTCCTGATCCAGTAAATGTC CCAATAAACATGGTGTCCTTAAGTGTGCTGAGGTCGTCACTGGTTGATCTGTTCCTTGAGCAATCCAATTTGACTGTGACTACATTGATTTTTGGGCAAC CATCTACATTTGAAATTTTTAGGTTTCCTGGGGGAATCACTATAGTACCGATGCAATATGCTTCAATCTGGCAGATGCCCCAGATTCTCTTTAATTTTAC TCTTAACAATTCCATATCTGAAGTTCTGGACAATTTCGGAGACTTAAAAGATCAGTTGGAATTTGGGTTGCACCTAAGGCAATTTGAGACTGTGTATGTG AAGATAACAAATGAGGATGGTTCCACAATAACTCCCCCAGTCACAGTTCAGGTTTCAGTCATGTCGGATCTGGGGACCCTTCAGCTACAGAGGTTGAAGC AGTTGGCTCAAATAATCACAGCTTCTCCTGTAAAAAATCTTGGCCTCAACAACTCGGTCTTCGGCAAAGTAAAGAGTGTTGTTTTGTCATCATATTTAAA GGATACGCTTCATGGAACTCCTCCTACTCCTTCACCAGCAATTTCTCCATCTCTCCCTCCAGCAATTGCTCCATTTGCTCCTGTAAATTCCCCTGCACCT TCTGTGATACCTGCTCTCCCTCCTCAGCCCTGTCCACAACATAGTTCTGCAACTCCGCCAAGCAACTCTCCATCTGGTTCTAACCAAACTCCTCGTTTAC ATCCAGAGCCCCCAGATGTGTCTCCTTTACCTGGAGTATACTATGGTTCTGGTCCAGGGAAAGGTCCATTATTGTCACTTGCACCATCCACATTGGCTCA AACGCCATCATGTAAGTCATCACTGTCAAGTTATAAGACTTTTCCTGTTTCTGCTTATCATGATATAGTTAACAAGCAGGTAATTTGCATATTTTTACTA TTGGTTATGCCATTTCTTTATCACCCAATTTTTTTTTTTTTTGATGGTTCGGAAATAAAATCTTACCAGTGA
AA sequence Show only first row Show all	>Potri.001G210600.6 pacid=42788071 polypeptide=Potri.001G210600.6.p locus=Potri.001G210600 ID=Potri.001G210600.6.v4.1 annot-version=v4.1 MEYKEMERASTLVFKYILPSPPPVPLLHFCPGKPSGFLEREKRVTDAISSMGKGDSSYNQEQQQRHDDDDDDERRTRRLFLCERCSMGLSRISFKCVFIL MLSLCLLVSALFWIFPLHSSLHSVSGFDAKDEVKLSATVQAYFRLLKPVVQLVTHIARLEYDINEEIGIPNAKVAVLSMHRLASNWTDVVFGFIPDPVNV PINMVSLSVLRSSLVDLFLEQSNLTVTTLIFGQPSTFEIFRFPGGITIVPMQYASIWQMPQILFNFTLNNSISEVLDNFGDLKDQLEFGLHLRQFETVYV KITNEDGSTITPPVTVQVSVMSDLGTLQLQRLKQLAQIITASPVKNLGLNNSVFGKVKSVVLSSYLKDTLHGTPPTPSPAISPSLPPAIAPFAPVNSPAP SVIPALPPQPCPQHSSATPPSNSPSGSNQTPRLHPEPPDVSPLPGVYYGSGPGKGPLLSLAPSTLAQTPSCKSSLSSYKTFPVSAYHDIVNKQVICIFLL LVMPFLYHPIFFFFDGSEIKSYQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10790			unknown protein		Potri.001G210600 [exp]	0	1
AT2G39760		ATBPM3	BTB/POZ/MATH-domains containin...		Potri.010G199200 [exp]	2.00	0.8624
AT5G66810			unknown protein		Potri.005G137100 [exp]	4.00	0.8230
AT5G58110			chaperone binding;ATPase activ...		Potri.018G151500 [exp]	6.16	0.7914
AT5G16220			Octicosapeptide/Phox/Bem1p fam...		Potri.017G119100 [exp]	7.34	0.8378
AT2G43190			ribonuclease P family protein ...		Potri.001G033900 [exp]	7.34	0.7941
AT1G56170	CCAAT	NF-YC2, ATHAP5B...	"nuclear factor Y, subunit C2"...		Potri.005G094900 [exp]	8.48	0.8003	HAP5.5
AT3G10480	NAC	ANAC050	NAC domain containing protein ...		Potri.010G229700 [exp]	12.24	0.8290
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Potri.002G031900 [exp]	16.24	0.7787	GBF5.2
AT1G55480		ZKT	protein containing PDZ domain,...		Potri.001G002700 [exp]	16.79	0.7691
AT1G55690			Sec14p-like phosphatidylinosit...		Potri.011G168300 [exp]	16.97	0.6936

Compare expression of checked genes

Potri.001G210600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.