Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09580 268 / 7e-92 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G57620 254 / 2e-86 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G21900 232 / 1e-77 emp24/gp25L/p24 family/GOLD family protein (.1) AT3G10780 186 / 2e-59 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G26690 154 / 7e-47 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G14010 145 / 9e-44 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G69460 141 / 4e-42 emp24/gp25L/p24 family/GOLD family protein (.1) AT2G03290 138 / 1e-40 emp24/gp25L/p24 family/GOLD family protein (.1) AT3G29070 134 / 4e-39 emp24/gp25L/p24 family/GOLD family protein (.1) AT2G03040 103 / 6e-28 emp24/gp25L/p24 family/GOLD family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G019300 [exp] 344 / 7e-122 AT1G09580 275 / 1e-94 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.002G085300 [exp] 259 / 2e-88 AT1G09580 280 / 2e-96 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.004G127200 [exp] 171 / 1e-53 AT1G26690 253 / 5e-86 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.008G090700 [exp] 161 / 7e-50 AT1G26690 308 / 1e-107 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.017G086900 [exp] 159 / 5e-49 AT1G26690 282 / 2e-97 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.010G164600 [exp] 157 / 3e-48 AT1G69460 272 / 3e-93 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.018G145544 [exp] 98 / 6e-26 AT1G26690 194 / 8e-64 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.010G081700 [exp] 51 / 9e-08 AT3G22845 366 / 1e-130 emp24/gp25L/p24 family/GOLD family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001615 [exp] 281 / 8e-97 AT1G09580 294 / 4e-102 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10022972 [exp] 280 / 2e-96 AT1G09580 297 / 3e-103 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10041939 [exp] 244 / 6e-82 AT1G21900 286 / 1e-98 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10030436 [exp] 144 / 8e-43 AT1G26690 263 / 2e-89 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10036786 [exp] 144 / 1e-42 AT1G26690 275 / 3e-94 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10037143 [exp] 139 / 2e-41 AT1G26690 249 / 2e-85 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10005227 [exp] 139 / 3e-41 AT1G26690 231 / 4e-77 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10030693 [exp] 129 / 1e-37 AT1G26690 218 / 2e-72 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10026625 [exp] 111 / 5e-30 AT1G26690 197 / 9e-64 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10039381 [exp] 54 / 9e-09 AT3G22845 350 / 1e-124 emp24/gp25L/p24 family/GOLD family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0521 [poplar] [flax] GOLD-like PF01105 [poplar] [flax] EMP24_GP25L emp24/gp25L/p24 family/GOLD
Representative CDS sequence Show only first row Show all	>Potri.001G210900.1 pacid=42789124 polypeptide=Potri.001G210900.1.p locus=Potri.001G210900 ID=Potri.001G210900.1.v4.1 annot-version=v4.1 ATGGGGGTGCGTGGCAAGTTGGGATTGGTTTGCATTTTAGGAGTATTGATCTGTAGCTGCAATTTTTTCATGGTTAGCGAAGCCGTATGGTTGAATCTAC CGGCATCCGGTACTAAGTGCGTGTCCGAGGAAATCCACAACAACGTTGTCGTTTTGGCTGATTATGTTGTCGTTTCCGATAACCATTCCCACATCCCTTC CATCTCTGTCAAGGTGACATCACCATATGGGAACAACCTTCACCATAAGGAGAATGTGACTCATGGGCAATTCGCTTTCACAACTCATGAGGCTGGCAAT TACCTGGCTTGTTTTTGGGTGGATGGCCACACTCAAGGGAGCGGAGATGTGAGTGTTAACATTGACTGGAAAACTGGAATTGCTGCTAAGGATTGGGATT CAGTTGCCAGAAAAGAGAAGATAGAGGGCGTTGAACTTGAGCTGCGGAAACTTGAAGGAGCAGTGGAGGCCATCCATGAGAATCTACTCTATCTCAAATC CAGGGAAGAAGAGTTGAGGTCTGTGAGTGAAGTAACAAATACCAGAGTAGCATTATTTGGTATCATGTCTTTGGGTGTCTGCATTGCGGTTTCGGCATTG CAAGTGTGGCACTTGAAACGATACTTCCAGAAGAAGAAGCTCATTTAG
AA sequence Show only first row Show all	>Potri.001G210900.1 pacid=42789124 polypeptide=Potri.001G210900.1.p locus=Potri.001G210900 ID=Potri.001G210900.1.v4.1 annot-version=v4.1 MGVRGKLGLVCILGVLICSCNFFMVSEAVWLNLPASGTKCVSEEIHNNVVVLADYVVVSDNHSHIPSISVKVTSPYGNNLHHKENVTHGQFAFTTHEAGN YLACFWVDGHTQGSGDVSVNIDWKTGIAAKDWDSVARKEKIEGVELELRKLEGAVEAIHENLLYLKSREEELRSVSEVTNTRVALFGIMSLGVCIAVSAL QVWHLKRYFQKKKLI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09580			emp24/gp25L/p24 family/GOLD fa...		Potri.001G210900 [exp]	0	1
AT2G16595			Translocon-associated protein ...		Potri.004G168500 [exp]	1.73	0.9577
AT5G14030			translocon-associated protein ...		Potri.001G323400 [exp]	2.00	0.9543
AT2G25310			Protein of unknown function (D...		Potri.006G257100 [exp]	2.64	0.9421
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Potri.002G036600 [exp]	4.24	0.9431
AT5G59410			Rab5-interacting family protei...		Potri.001G241500 [exp]	5.00	0.9453
AT1G04430			S-adenosyl-L-methionine-depend...		Potri.002G036732 [exp]	5.29	0.9476
AT1G76400			Ribophorin I (.1)		Potri.002G006600 [exp]	6.92	0.9377
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Potri.013G053500 [exp]	6.92	0.9501
AT1G14020			O-fucosyltransferase family pr...		Potri.010G164700 [exp]	7.41	0.9394
AT5G26360			TCP-1/cpn60 chaperonin family ...		Potri.018G138200 [exp]	7.74	0.9315

Compare expression of checked genes

Potri.001G210900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.