Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60890 1040 / 0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT1G10900 1012 / 0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT3G09920 753 / 0 PIP5K9 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) AT3G56960 553 / 0 PIP5K4 phosphatidyl inositol monophosphate 5 kinase 4 (.1) AT2G41210 550 / 0 PIP5K5 phosphatidylinositol- 4-phosphate 5-kinase 5 (.1) AT1G77740 462 / 7e-152 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT3G07960 436 / 1e-142 PIP5K6 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT1G21980 437 / 2e-142 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT2G26420 435 / 3e-142 PIP5K3 1-phosphatidylinositol-4-phosphate 5-kinase 3 (.1) AT1G01460 235 / 1e-69 ATPIPK11 Phosphatidylinositol-4-phosphate 5-kinase, core (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G019100 [exp] 1323 / 0 AT1G60890 1004 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.006G121200 [exp] 760 / 0 AT3G09920 1230 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Potri.001G027900 [exp] 572 / 0 AT3G07960 1107 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.003G196000 [exp] 561 / 0 AT3G07960 1094 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.002G088100 [exp] 525 / 9e-176 AT1G21980 1136 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.005G172800 [exp] 431 / 9e-140 AT1G21980 1139 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.004G139900 [exp] 385 / 2e-122 AT1G21980 948 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.019G015768 [exp] 384 / 7e-122 AT1G21980 947 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.016G036800 [exp] 371 / 1e-116 AT3G56960 1214 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015456 [exp] 1127 / 0 AT1G60890 1036 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10001377 [exp] 1125 / 0 AT1G60890 1044 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10020821 [exp] 992 / 0 AT1G60890 935 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10012689 [exp] 985 / 0 AT1G60890 932 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10014408 [exp] 788 / 0 AT3G09920 1228 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10023909 [exp] 781 / 0 AT3G09920 1210 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10021505 [exp] 751 / 0 AT3G09920 1180 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10022606 [exp] 748 / 0 AT3G09920 1179 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10039011 [exp] 539 / 0 AT3G56960 1174 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10008651 [exp] 523 / 2e-175 AT3G07960 990 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF01504 [poplar] [flax] PIP5K Phosphatidylinositol-4-phosphate 5-Kinase CL0251 [poplar] [flax] MORN PF02493 [poplar] [flax] MORN MORN repeat
Representative CDS sequence Show only first row Show all	>Potri.001G211200.1 pacid=42791823 polypeptide=Potri.001G211200.1.p locus=Potri.001G211200 ID=Potri.001G211200.1.v4.1 annot-version=v4.1 ATGGTGCTCTTGCGTCGCTTATTAGACATTGAAGACAGTGAAAGTATCGACGAGAAGCCCCTATCAAATGGAGATGTCTATATTGGTAGCTTTAAGGGAT CACTTCCCCATGGCAAGGGTAAATATATATGGTCCGATGGAACAGTGTACGAGGGTGACTGGGAAGAAGGTAAAATTACTGGGAAAGGACAGATACTTTG GTCATCAGGAGCAATATATGAAGGTGATTTCTCTGGTGGTTACCTTCATGGAATTGGCACCTTTACAGGACTTGATGGGTCTGAATACAGAGGGGCCTGG AGAATGAATATACAGCATGGGCTTGGAATGAAACGATATTCTAATTTAGATATTTATGAAGGTTCTTGGAAGGAGGGGATGAATGAAGGCTGTGGCAGGT ACTCTTGGAATAGTGGAAATATGTATATCGGGAATTGGAAAGGCGGAAAAATGTGTGGCAGAGGGGTTATGAAATGGGAAAATGGTGATGTTTTTGATGG CTTTTGGCTGAATGGTCTTAGACATGGATCTGGAGTTTATAGGTTTTCTGATGGGGGATACTACTTTGGAATGTGGAGTATGGGCCTTAAGGATGGAAAA GGAACATTCCACCCAGCTGGAACTAAACATCCGTCTCTAAGGAAGTGGGGCAGCTCCATAGGCTGTGATGGAATTGGAAGAAATTTGTTATCTCATAGTT CCTCTATAAATTCAGAGGAAGTCAGGGTTCCAAAACCAAATTTCTTGGGCAGTCTATCTGGGAAAATGTCAATCAGTAAAATCTTAAAAGATCCTGTCCG ATTATCACAAAGAAATGCCTTACTAGATGAAAAATGGAGTCTTTGTAATCCTTCCGGAGAATTTATATATCGCGAACCATCATGTACGCTGTCCCAAACC TCTGAAGAAGGTCAAAGTGGGGTGCAGAATAACTCTACTGTAGTTTATGAAAGGGAATACTTGCAAGGAGTTTTGAAAAACGAGAAAGTTAGAGGTACAG AGCTATCCCGCAAAACTAAACAGAGAAAAAAATTTCATGTGAAAGAAGCAAAAAGGAAGTCATGTGTGGATATTTTTGAAGGACAACGGAGCTATTATCT AATGCTTAATTTGCAACTTGGTATAAGGTACACTGTTGGCAAGATTACACCAGTGCCTATGCGTGAAGTTCGAGATTCTGATTTTGGAGATCGAGCTAGA ATAAGGATGTATTTTCCCAGAAAGGGTTCCCAGTTTACACCTCCACACTATTCTATTGATTTCTATTGGAAAGACTACTGCCCTATGGTCTTCAGGAATT TAAGGGAGATGTTCAAGCTAGATGCAGCTGATTACATGATGTCCATTTGCGGTGATGATGGTCTAAGGGAGCTTTCTTCCTCTGGAAAAAGTGGCAGTAT CTTCTATCTTTCACATGATGATAGATTTGTGATTAAGACATTAAAAAAGTTCGAACTAAAGACCCTTCTGCAGATGCTTCCAAACTATTACATTCATGTA GGGAAGTATGAAAATACACTCATCACAAAATTTTTTGGGGTTCACCGAATTACATTGAGAGGTGGGAGAAAGGTACGTTTTGTAGTCATGGGAAATATGT TTTGCACAGAATTAAGAATTCATCGTCGCTTTGACCTGAAGGGGTCAACTCAAGGGAGATACACAGATGAAGATAAGGTTGGAGAAAATACCACGCTAAA AGATCTTGATCTAGAATACGAGTTTCTTATGGACAAATTATTACGAAAATCGCTTTTCAAGCAACTCTCTTTGGACTGCAGTTTTTTAGAATCTCAACAG ATAATTGATTATAGCCTTCTCTTGGGATTACATTTTAGAGCACCTGAACAGTTGAGATCCATCTTAGAACCTCCAGCTACAATGCTGAATGATGCTGGTT TACCTGCAGATGGTATAAACTCGCAAGGGCATCTCTCAACTCCTCCAAAAGGCCTTCTCCTAGTGACCCATGAACCCGGCTTTGTGAGCACTGCACCGGG ACCTCACATCAGAGGAAATACATTGAAAGCATACTCTCTTGGTGAGAGGGAGGTTGATCTCTTGCTGCCTGGCACTGGAAGGTTGCGGGTGCAGCTAGGA GTGAACATGCCAGCTCAGGCTAGCCACAAGCTGACGCGGGACGAGGTTGATTCAGCAGAGATTGAGCTTTTCGAGGTTTACGATGTTGTTCTCTACATGG GCGTAATAGATATATTACAGGAATACAATGTGAAAAAGAAAGTTGAGCATGCTTGCAAATCCTTAAAATTTGACCCTCTGTCGATTTCTGCAGTTGAGCC CAAATTGTATGCAAAACGTTTCCTCAATTTCTTGCACAAAGTTTTCCCAGAGCAGCCATGA
AA sequence Show only first row Show all	>Potri.001G211200.1 pacid=42791823 polypeptide=Potri.001G211200.1.p locus=Potri.001G211200 ID=Potri.001G211200.1.v4.1 annot-version=v4.1 MVLLRRLLDIEDSESIDEKPLSNGDVYIGSFKGSLPHGKGKYIWSDGTVYEGDWEEGKITGKGQILWSSGAIYEGDFSGGYLHGIGTFTGLDGSEYRGAW RMNIQHGLGMKRYSNLDIYEGSWKEGMNEGCGRYSWNSGNMYIGNWKGGKMCGRGVMKWENGDVFDGFWLNGLRHGSGVYRFSDGGYYFGMWSMGLKDGK GTFHPAGTKHPSLRKWGSSIGCDGIGRNLLSHSSSINSEEVRVPKPNFLGSLSGKMSISKILKDPVRLSQRNALLDEKWSLCNPSGEFIYREPSCTLSQT SEEGQSGVQNNSTVVYEREYLQGVLKNEKVRGTELSRKTKQRKKFHVKEAKRKSCVDIFEGQRSYYLMLNLQLGIRYTVGKITPVPMREVRDSDFGDRAR IRMYFPRKGSQFTPPHYSIDFYWKDYCPMVFRNLREMFKLDAADYMMSICGDDGLRELSSSGKSGSIFYLSHDDRFVIKTLKKFELKTLLQMLPNYYIHV GKYENTLITKFFGVHRITLRGGRKVRFVVMGNMFCTELRIHRRFDLKGSTQGRYTDEDKVGENTTLKDLDLEYEFLMDKLLRKSLFKQLSLDCSFLESQQ IIDYSLLLGLHFRAPEQLRSILEPPATMLNDAGLPADGINSQGHLSTPPKGLLLVTHEPGFVSTAPGPHIRGNTLKAYSLGEREVDLLLPGTGRLRVQLG VNMPAQASHKLTRDEVDSAEIELFEVYDVVLYMGVIDILQEYNVKKKVEHACKSLKFDPLSISAVEPKLYAKRFLNFLHKVFPEQP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G60890			Phosphatidylinositol-4-phospha...		Potri.001G211200 [exp]	0	1
AT3G54340	MADS	AP3, ATAP3	APETALA 3, K-box region and MA...		Potri.007G017000 [exp]	1.73	0.7706
AT3G42960		ASD, ATA1	TAPETUM1, TAPETUM 1 (.1)		Potri.008G141800 [exp]	7.07	0.6335	Pt-ATA1.1
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Potri.008G191051 [exp]	8.94	0.7549
AT3G19640		MRS2-3, MGT4	magnesium transporter 4 (.1)		Potri.001G291932 [exp]	21.14	0.7693
AT2G21340			MATE efflux family protein (.1...		Potri.009G122900 [exp]	27.33	0.6147
AT1G11660			heat shock protein 70 (Hsp 70)...		Potri.004G016700 [exp]	28.14	0.6451
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Potri.008G190950 [exp]	30.82	0.7465
AT4G12740			HhH-GPD base excision DNA repa...		Potri.014G198000 [exp]	36.08	0.6291
AT1G49180			protein kinase family protein ...		Potri.019G007200 [exp]	36.27	0.6894
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Potri.001G343500 [exp]	36.91	0.6374

Compare expression of checked genes

Potri.001G211200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.