Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10910 773 / 0 EMB3103 EMBRYO DEFECTIVE 3103, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74850 145 / 3e-36 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT5G39710 134 / 1e-32 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G64320 129 / 4e-31 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G61990 129 / 1e-30 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G31400 124 / 4e-29 GUN1 genomes uncoupled 1 (.1) AT3G22470 123 / 4e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G02860 121 / 2e-28 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G01110 120 / 4e-28 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05670 119 / 1e-27 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G019000 [exp] 1024 / 0 AT1G10910 796 / 0.0 EMBRYO DEFECTIVE 3103, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G118500 [exp] 132 / 6e-32 AT2G31400 1213 / 0.0 genomes uncoupled 1 (.1) Potri.002G193900 [exp] 132 / 7e-32 AT2G31400 1192 / 0.0 genomes uncoupled 1 (.1) Potri.015G069100 [exp] 131 / 1e-31 AT1G74850 1268 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Potri.017G036400 [exp] 129 / 8e-31 AT3G18110 1949 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G276500 [exp] 128 / 1e-30 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G123900 [exp] 128 / 2e-30 AT3G18110 1974 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G032600 [exp] 126 / 4e-30 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G257300 [exp] 124 / 2e-29 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001378 [exp] 863 / 0 AT1G10910 818 / 0.0 EMBRYO DEFECTIVE 3103, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033127 [exp] 132 / 1e-31 AT1G74850 1179 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Lus10027914 [exp] 131 / 2e-31 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 130 / 3e-31 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010410 [exp] 125 / 1e-29 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 124 / 3e-29 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012139 [exp] 121 / 3e-28 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006962 [exp] 120 / 4e-28 AT2G18940 976 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015530 [exp] 119 / 2e-27 AT2G18940 1010 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020002 [exp] 117 / 4e-27 AT2G18940 1015 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.001G211300.1 pacid=42790616 polypeptide=Potri.001G211300.1.p locus=Potri.001G211300 ID=Potri.001G211300.1.v4.1 annot-version=v4.1 ATGGAGTTATCAACTGTCACCACCTGCACAGGGTTTCACCATAACCTCACCCGCTCAAAAGCCTTATCTTTTCCATTAATTCCCAGCGTATCCACCACCA GCAGCTGCCAACGCACTTCTGCTGCTGCTGCAGCAGCAGCAGCAACAACATCACTTGTCAATGAACCTTGTAATGATGACTCACAACCGGCAACAACTAC AAGAAGAAGACCAAAAGGTGGCGCAGTTGATGCTCAAAGGCGTCAGTCTAAGTCATACATGTCTAGAAAAGCTGCCATTCTTGAAGTTCAACAATCCCCT CATTTGGATTCTGCTCTTCAAAGATTAGGAGGGATGTTGAAGGTGCAAGACTTGAATATCATTTTGCGGAATTTTGGGGAGCAATGCAGATGGCAGGATC TTTCTCAGCTCTTTGATTGGATGCAACGGCACAACAAAATCAGTGCTTCATCTTATAGCAGTTATATAAAGTTCATGGGGACAAGTCTTAACCCGGCAAA GGCACTAGAAATATACCACAGCATTCCTGATGAATCAAAAAAAACTAATGTCTTCATATGTAATTCACTTCTTAGATGCCTGGTCAGGAATACCAAGTTC GATAGCAGCATGAAATTCTTTCATAAGATGAAGAACAATGGTCTAACACCAGATGCTATTACATATAGTACGCTGCTTGCTGGGTGCATGAAAATCAAAG ATGGGTATTCTAAGGCATTGGATCTGGTTCAGGAACTGAATTATAATGGACTGCAGATGGACAGCATAATGTATGGGACACTTTTGGCAGTTTGTGCTTC AAATAATCGGTGTGAAGAAGCACAAAGCTACTTTAACCAGATGAAGGATGAGGGTCATTCGCCTAATATATTTCATTATAGCTCGTTACTCAATGCATAC TCTTCTGATGGAAACTACAAGAAGGCTGAAGAGTTGGTGCAGGACATGAAATCTTCAGGGTTAGTACCAAATAAGGTAATATTGACAACTCTGTTAAAGG TATATGTAAGAGGAGGCTTGTTTGAAAAATCCAGAGACCTTCTGGTAGAACTGGATACCTTGGGCTTTGCAAAAAATGAGATGCCCTATTGTTTATTGAT GGATGGCCTTGCTAAGAATGGGCTCTTAGATGAAGCAAGATCAGTTTTCAATGAAATGAAGGAAAAACGTGTTAAATCTGGTGGCTATTCGTACAGTATC ATGATTTCATCATTTTGCCGAGGTGGCCTTTTTGAAGAGGCAAAGGAGTTGGCGGAGGAGTTTGAAGCCAAGTATGATAAATATGACGTAGTTATATTGA ATACAATTCTTTGTGCCTACTGTAGAACAGGTGAAAAAGAGAGTGTGATGCGAACAATGAGGAAAATGGATGAATTGGCGATCAGTCCTGACTACAATAC TTTCCATATTCTTATCAAGTATTTTTGTAAGGAGAAGTTATATATGCTTGCTTACCAGACCATGGAAGACATGCATAGGAAAGGCCATCAACCTATGGAG GAGCTTTGTTCCTCATTGATTCTTCATCTTGGTAAAATTAAAGCCCATGCAGAAGCCTTTTCTGTTTACAGTATGTTGAAGTCTAGCAAAAGGACAATGT CTAAAGCCTTTCATGAGGATATTTTACACATTCTTATTGCTGGAAGGCTTCTCAAAGATGCTTATGTAGTAGTTAAGGATAATGCAGAATTGATCTCTCC AGCTGCAATTAAGAAGTTTGCAAGCTCATTTGTGAAGCTTGGTGACATCAATTTGATAAATGATGTTATGAAGGTTATTCATGGTTCTGGATACAAGATT GATCAGGAACTATTTCTGATGGCTGTGTCACGTTACATTGCTGAACCTGAAAAGAAGGACTTGCTTATACAATTGCTACAATGGATGCCAGGCCAAGGTT ATGTTGTTGATTCCTCAACAAGAAACCTGATCCTTAAGAACTCACACTTATTTGGCCGCCAGCTCATTGCTGAGATCCTGTCCAAGCAGCACATGACGTC AAAAGCCTTGAAAGCTCAGTAG
AA sequence Show only first row Show all	>Potri.001G211300.1 pacid=42790616 polypeptide=Potri.001G211300.1.p locus=Potri.001G211300 ID=Potri.001G211300.1.v4.1 annot-version=v4.1 MELSTVTTCTGFHHNLTRSKALSFPLIPSVSTTSSCQRTSAAAAAAAATTSLVNEPCNDDSQPATTTRRRPKGGAVDAQRRQSKSYMSRKAAILEVQQSP HLDSALQRLGGMLKVQDLNIILRNFGEQCRWQDLSQLFDWMQRHNKISASSYSSYIKFMGTSLNPAKALEIYHSIPDESKKTNVFICNSLLRCLVRNTKF DSSMKFFHKMKNNGLTPDAITYSTLLAGCMKIKDGYSKALDLVQELNYNGLQMDSIMYGTLLAVCASNNRCEEAQSYFNQMKDEGHSPNIFHYSSLLNAY SSDGNYKKAEELVQDMKSSGLVPNKVILTTLLKVYVRGGLFEKSRDLLVELDTLGFAKNEMPYCLLMDGLAKNGLLDEARSVFNEMKEKRVKSGGYSYSI MISSFCRGGLFEEAKELAEEFEAKYDKYDVVILNTILCAYCRTGEKESVMRTMRKMDELAISPDYNTFHILIKYFCKEKLYMLAYQTMEDMHRKGHQPME ELCSSLILHLGKIKAHAEAFSVYSMLKSSKRTMSKAFHEDILHILIAGRLLKDAYVVVKDNAELISPAAIKKFASSFVKLGDINLINDVMKVIHGSGYKI DQELFLMAVSRYIAEPEKKDLLIQLLQWMPGQGYVVDSSTRNLILKNSHLFGRQLIAEILSKQHMTSKALKAQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10910		EMB3103	EMBRYO DEFECTIVE 3103, Pentatr...		Potri.001G211300 [exp]	0	1
AT2G38780			unknown protein		Potri.001G024200 [exp]	2.23	0.9811
AT5G63520			unknown protein		Potri.011G010200 [exp]	6.70	0.9718
AT2G22360			DNAJ heat shock family protein...		Potri.005G073900 [exp]	7.14	0.9744
AT1G71720		PDE338	PIGMENT DEFECTIVE 338, Nucleic...		Potri.002G063400 [exp]	7.74	0.9724
AT2G37220			RNA-binding (RRM/RBD/RNP motif...		Potri.016G090700 [exp]	8.12	0.9748	RBP29.1
AT4G18370		DEGP5, DEG5, HH...	PROTEASE HHOA PRECUSOR, DEGP p...		Potri.011G083300 [exp]	9.59	0.9740	Pt-HHOA.1
AT1G32220			NAD(P)-binding Rossmann-fold s...		Potri.001G136900 [exp]	10.00	0.9727
AT4G03280		PGR1, PETC	PROTON GRADIENT REGULATION 1, ...		Potri.013G148900 [exp]	11.31	0.9720	Pt-PETC.2
AT1G06240			Protein of unknown function DU...		Potri.019G090600 [exp]	14.96	0.9649
AT4G24770		CP31, ATRBP33, ...	ARABIDOPSIS THALIANA RNA BINDI...		Potri.012G090200 [exp]	15.87	0.9723

Compare expression of checked genes

Potri.001G211300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.