Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71160 563 / 0 KCS7 3-ketoacyl-CoA synthase 7 (.1) AT1G25450 476 / 5e-166 KCS5, CER60 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1) AT1G19440 475 / 3e-165 KCS4 3-ketoacyl-CoA synthase 4 (.1) AT1G68530 467 / 4e-162 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) AT2G16280 462 / 3e-160 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT4G34510 456 / 5e-158 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT1G01120 455 / 4e-157 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT2G26640 454 / 5e-157 KCS11 3-ketoacyl-CoA synthase 11 (.1) AT1G04220 447 / 7e-154 KCS2 3-ketoacyl-CoA synthase 2 (.1) AT4G34250 442 / 2e-152 KCS16 3-ketoacyl-CoA synthase 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G015100 [exp] 531 / 0 AT1G71160 486 / 6e-170 3-ketoacyl-CoA synthase 7 (.1) Potri.004G155600 [exp] 477 / 4e-166 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.009G116700 [exp] 476 / 1e-165 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.010G125300 [exp] 471 / 4e-164 AT1G68530 915 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) Potri.006G249200 [exp] 471 / 1e-163 AT2G26640 886 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.014G196200 [exp] 468 / 2e-162 AT1G19440 854 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.018G032200 [exp] 463 / 1e-160 AT2G26640 867 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.008G120300 [exp] 459 / 3e-159 AT1G68530 895 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) Potri.002G178000 [exp] 454 / 9e-157 AT1G01120 826 / 0.0 3-ketoacyl-CoA synthase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041452 [exp] 483 / 1e-168 AT1G25450 890 / 0.0 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1) Lus10034319 [exp] 479 / 7e-167 AT1G68530 895 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) Lus10002533 [exp] 472 / 5e-164 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10001657 [exp] 471 / 1e-163 AT1G19440 892 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10042318 [exp] 471 / 2e-163 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10026345 [exp] 470 / 3e-163 AT1G19440 889 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10002691 [exp] 469 / 9e-163 AT1G01120 845 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Lus10020662 [exp] 464 / 7e-162 AT1G71160 470 / 6e-164 3-ketoacyl-CoA synthase 7 (.1) Lus10030209 [exp] 459 / 1e-158 AT1G01120 845 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Lus10012611 [exp] 458 / 3e-158 AT1G01120 863 / 0.0 3-ketoacyl-CoA synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [poplar] [flax] Thiolase PF08392 [poplar] [flax] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein CL0046 [poplar] [flax] Thiolase PF08541 [poplar] [flax] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Potri.001G211400.2 pacid=42790463 polypeptide=Potri.001G211400.2.p locus=Potri.001G211400 ID=Potri.001G211400.2.v4.1 annot-version=v4.1 ATGGGAACCGAAATACTAACACATTTCCTTGAAGCTCCTTTCTCCTTTACCCCTTTCTTCCTTGTAATCACTTTGATAACCTGCTTTCTCTACTTTGCTC TCAGATCCAATTCTGTCTATCTCATTGACTTCACTTGCTATCTTCCAGCGGATAACTTGCGAGTCACAATCTCTAATTTCATAGAACATGTGCACCTCGG CGGTACCTTCAACACAGACTGCAGTGAGTTCCAAGAAAGAGTTGTGGAAAGATCGGGCATAGGAGATGAAGCTTGCATGCCTATTGCATTGCATGAGCTG CCTACTGAAGCTTCATTTAAAGCATCTCTTGAAGAGGTTGAACAAGTTCTCTTCCCGATCGTTGAAGATCTTCTGTCCAAGCACAACATCAGCCCTAAGA GCATTGATATTTTAATATCCAACTGTAGCCTTTTCTGTCCTGCTCCATCCATTACTGCAATGATCACAAACAAGTTCGGGTTCCGGAGCAACATAAAGAG CTTCAGCCTAAGCGGGATGGGGTGCAGTGCCGGACTCTTGTCGATAAGTTTGGCTAAAGACCTTTTGAAAGTTCACAAGAATTCGTTGGCTTTAGTTCTG AGCATGGAAGCTATTAGTTCGAATGGTTATCACGGTAAAATCAAGTCGATGCTTGTAACCAACACTATATTTCGTATGGGTGGAGCTGCTGTTTTGCTGT CAAACAAGAAGCACGATGAGCAGAGAGCAAAGTACAAGCTCCTGCACCTTGTCCGTACCCACATGGGATCCGATGACCGATCATACACTTCTGTCATTCA ACAAGATGATGAAGATGGGTTTGTAGGAGTGTCACTATCAAGGTCACTTTTACATGTCGCAGGCAACGCGTTAAGAACCAATATATCAGAGCTTGGCCCC CTTGTGCTGCCGTATCTTGAACAGCTTCGATACGGGTGGGGAGTTGTGCATCAGAAACTTTGGGTTACAGCGGGGAAAAGAGAGACATACGTGCCAAATT TTAAGAAGGCTTTCGAGCATTTCTGCATACATGCTGGGGGGAGGGCCATAATTGATGCTGTGGAGAGTAATCTGAAGCTGCAAAAGGAAGATGGAGAAGC TTCAAGGATGATGCTTTATAGATTTGGTAACACGTCGTCTTCTTCGGTCTGGTATGAACTCTGCTATCTGGAAGCCAAGGGAGCGGTGAAGAAGGGAGAC AGGATTTGGCAAATTGCATTTGGAAGTGGTTTTAAGTGTAACAGTGCAGTTTGGAAATCCATTTCTGTTCCCAATCCAGAGGAAAGAAATGCTTGGTCAG ATAGGATTCATTTGTATCCTGTACAGACACCGATTGCGCCATGA
AA sequence Show only first row Show all	>Potri.001G211400.2 pacid=42790463 polypeptide=Potri.001G211400.2.p locus=Potri.001G211400 ID=Potri.001G211400.2.v4.1 annot-version=v4.1 MGTEILTHFLEAPFSFTPFFLVITLITCFLYFALRSNSVYLIDFTCYLPADNLRVTISNFIEHVHLGGTFNTDCSEFQERVVERSGIGDEACMPIALHEL PTEASFKASLEEVEQVLFPIVEDLLSKHNISPKSIDILISNCSLFCPAPSITAMITNKFGFRSNIKSFSLSGMGCSAGLLSISLAKDLLKVHKNSLALVL SMEAISSNGYHGKIKSMLVTNTIFRMGGAAVLLSNKKHDEQRAKYKLLHLVRTHMGSDDRSYTSVIQQDDEDGFVGVSLSRSLLHVAGNALRTNISELGP LVLPYLEQLRYGWGVVHQKLWVTAGKRETYVPNFKKAFEHFCIHAGGRAIIDAVESNLKLQKEDGEASRMMLYRFGNTSSSSVWYELCYLEAKGAVKKGD RIWQIAFGSGFKCNSAVWKSISVPNPEERNAWSDRIHLYPVQTPIAP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71160		KCS7	3-ketoacyl-CoA synthase 7 (.1)		Potri.001G211400 [exp]	0	1
					Potri.017G113750 [exp]	7.41	0.8957
AT2G32730			26S proteasome regulatory comp...		Potri.004G183675 [exp]	9.05	0.8676
AT1G04910			O-fucosyltransferase family pr...		Potri.001G316800 [exp]	18.33	0.8664
AT2G38020		EMB258, MAN, VC...	VACUOLELESS 1, MANGLED, vacuol...		Potri.002G057800 [exp]	32.72	0.8553	Pt-VCL1.3
AT5G22050			Protein kinase superfamily pro...		Potri.001G215000 [exp]	58.32	0.8346
AT5G62310		IRE	INCOMPLETE ROOT HAIR ELONGATIO...		Potri.012G127800 [exp]	62.39	0.8355
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Potri.005G029900 [exp]	85.20	0.8155
AT2G39550		GGB, ATGGT-IB, ...	GERANYLGERANYLTRANSFERASE-I BE...		Potri.008G054500 [exp]	87.85	0.8251	Pt-ATGGT.1
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.003G145950 [exp]	97.48	0.8197
AT3G02880			Leucine-rich repeat protein ki...		Potri.004G066300 [exp]	99.77	0.7696

Compare expression of checked genes

Potri.001G211400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.